Gene detail

Gene detail information of Glyur000286s00016512

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G39865.1	7.00E-64	Glutaredoxin family protein
NR	XP_004489382.1	5.65E-152	PREDICTED: uncharacterized protein At3g28850-like [Cicer arietinum]
Swissprot	tr\|Q9FLE8\|Y5986_ARATH	8.00E-106	Uncharacterized protein At5g39865
trEMBL	tr\|I1N640\|I1N640_SOYBN	1.00E-142	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G02500.1}

Sequence

Transcript Sequence

>Glyur000286s00016512.1
ATGGGTTGTGTGAATTCCAAACAAAAGGGATGCAGTAATTGCAACACCCCTTATTGCCCTGTGCCTAGAAGCTACTCGATGCATGTACATCACCCACCTCAAAGCAAAGGGGACAGTTACCATGTTGTAGCACTCACATCAACCACATTGGGTTCTTTAGACCTTAATGTAACCCACAACCATGTCAATGGTTTCAGGTTTTCCAATGTTAATAAGGTCAGTGACATGAGTGACAGTTTCAGGAAGGAGAAGGAAGAGAAGAAGACATGGTCCAATATGATTGAACACAAGTTACCAAAAGCTATTATTGCCAAGAAGAGTACTCCAATAATCACAACACCACCCTGTGAGCCAGAGACTATCATCAACACNTGGGAACTCATGGAAGGACTTGAAGAAGACACAACAAGCCCTTTCCAATCACCAAATGTCAATGTCAATGCCAATGCCCATGTTGATGTTGATCCAACCAAGCCTAGTTTCATAGAGAATGATCATGGCACTACTACTGAGGAGGGATCAAATCTCAAGGTTGATCAGGCTTCAGATTTTGATGATCCTCAAGTGGCTAGAAAGGGATTATTCTNTTTGGAGGAAAAGAAAATCAGTGGTGATGATGATGATGTTGTTGTTGTGGATTTCAAGGTTGTAGCCCCATATGGGAAGGAGGAGGTGAAGGTGGTGTTGTATTTCACAAGCCTTCGTGGGGTGAGAAAGACTTATGAGGATTGTTGCCATGTTAGGCTCATTCTGAAAGGATATGGGGTGAGGGTTGATGAGAGAGATGTGTCAATGCATTTGGGGTTCAAGGAAGAGCTCAAAGAGCTACTTGGTGGTGATGGTGGTTATTATGGTAAAGGAGGAATATTGCCAAGGGTGTTTGTTGGGAGGAAATACATTGGTGGAGCTGAGGAAATTCAGAAACTTCATGAGGATGGGAAACTTGAGAAATTGCTTGATTGTTGTGAGAAGATTGATGATGACAATGATGATGGATGTGAGGCTTGTGGGGATATAAGGTTTGTGCCTTGTGAAACATGTTATGGAAGTTGTAAAATCTACTATGAAGGTGATGATGATGAAGAAGAATATGAGGGTGATGGTGAGGTGGATGAGTGTGGATTCCAGCGTTGTCCTGATTGCAATGAAAATGGGCTAATAAGATGCCCCAATTGCTGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00286	201204	202385	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0045454 cell redox homeostasis

molecular_function

GO:0009055 electron carrier activity

GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000286s00016512.1	PF00462.19	Glutaredoxin	228	300	8.70E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.185
SRR1783600	control	0.168
SRR1783602	moderate drought stress	0.221
SRR1811619	moderate drought stress	0.175

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.276
DRR006520	Root Summer glycyrrhizin high producing strain	0.324
DRR006521	Root Winter glycyrrhizin high producing strain	0.566
DRR006522	Root Winter glycyrrhizin high producing strain	0.461
DRR006523	Root Summer glycyrrhizin low producing strain	0.999
DRR006524	Root Summer glycyrrhizin low producing strain	1.253
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.472
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.470

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.486
SRR2868004	Drought Stress (root)	9.018
SRR2967015	Control (root)	15.228

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.686
SRR9715740	Leaf	0.421
SRR9715741	Leaf	0.589
SRR9715739	Root	3.040
SRR9715742	Root	2.914
SRR9715743	Root	3.700

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.712
SRR8749028	MeJA induced 9h	60.284
SRR8749029	MeJA induced 9h	21.181
SRR8749030	Uninduced	85.930
SRR8749031	Uninduced	126.002
SRR8749032	Uninduced	53.732

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.932
SRR8400027	Control - Root	1.507