Gene detail

Gene detail information of Glyur000286s00016505.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G39890.1	6.00E-91	Protein of unknown function (DUF1637)
NR	KEH24987.1	2.48E-174	2-aminoethanethiol dioxygenase-like protein [Medicago truncatula]
trEMBL	tr\|A0A072U5P5\|A0A072U5P5_MEDTR	9.00E-175	2-aminoethanethiol dioxygenase-like protein {ECO:0000313\|EMBL:KEH24987.1}

Sequence

Transcript Sequence

>Glyur000286s00016505.1
CAAGTATGGCCCCTGGTTTTCTGACTTCTCTTGCAAAAACCAACTGTTTCTCTCTCTCAACTAACCCCTCTCTCCTTCTTCCTTCCTTCTTCCTTCCCTCTTTTATATCAATGTCAATCCCCAATCTTCACCCACCATCACAATTTTCCGTGCCTTTTCCAATTTTTACCTCTTTCATATTTTNCCCCCCCATCAAAACCCCAACACGATCAACAACAACAACAACAGCTACAACAACCTGTGCAAAAACCCTCTCAGCAAAAAAACAAAAAAAATTTGGCGGCGCAAAGTNGAGGTCTTTTTCTTTTTATGAATGGGGATTGAGAGGACCTTGGCTGATAGAAAAGGTAGAAGAGACTTTTGTGAATTGCCAAGAGAAACCATTACCAGCAGCAACTCAAGGAGGAACCGGCGGCGTCAGAAGAAGATGCCGCCGGTTCAGAAGCTATTCGACACTTGCAAGGATGTCTTTGCCTCTGGTGGGACCGGGATTGTCCCTCCCCCTCAAGACATTGACACCTTGAAGTCTGTTCTAGATGGAATAAAACCAGAAGATGTTGGCTTGAGACCTGATATGCCATACTTCCGGGCAAATGCCTCACACAGAATGCCAAAAATCACATACCTTCACATTTATGAGTGTGAAAAGTTCTCGATGGGAATATTCTGTCTACCACCTTCTGGGGTTATTCCTCTTCACAACCACCCTGGAATGACGGTTTTTAGTAAGCTTCTTTTTGGAACCATGCANATCAAATCATATGATTGGGTGGTTGACTTGCCTCCTGAATCTCCTTCCGCAATCAAACCATCAGAAAGCCATATACCTGAGTTGAGGTTAGCCAAAGTAAAGGTAGATGATGATTTCACAGCACCTTGCAACCCCTCAATCCTTTATCCTGAAGATGGTGGCAACATGCACTGTTTCACAGCAGTGACAGCATGCGCAGTTCTAGATGTGCTTGGTCCTCCATATTCTGATTATGAAGGCAGACACTGCACATATTACCATAATTACCCCTTTTCCAACTTTTCAGTAGATGGATTATCCATACCAGAAGAGGAAAGGAATGGTTATGAATGGCTACAAGAGAGGGACCAACTAGATGATTTAAAAGTTGATGGAAAAATGTACAGTGGCCCAAAGATTGTGGAGAGCTAGCTAATCATATTATTCTGTACTCACACACACATACACACCCATCTTTTAGTTCCTGTAATCATTTGCTGCTTTCAGATATCCCTACAGAAAAGAGAGAAAAAAACTATCAATCTTGCAGATTTGATGCTGCCTTTCTGTCCCTTAGAGAAATTAAACAACGCATCATGTGCTCTTGTACTTTTTTTCCTTAGTGTTTTAAATTTTNTTTTTTTGCTTTTTCTTTATGGAACATGAGGCACTATTGTCACTTGGTGCTATTTTTCAGTCTATAGTTATTTCTTGTGTACATAACCAAGAAATGAATTGAAGGTGCAATGCAATGTGCTAGCTAGTAATCTTCTTAAATTGGTGGGACCTGTTTTGTAGGCTGGCGGGTTATTTCATTTAATTTACTTTCGGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00286	118966	123949	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10712	ADO	EC:1.13.11.19	Taurine and hypotaurine metabolism	map00430
			Taurine and hypotaurine metabolism	map00430

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0047800 cysteamine dioxygenase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000286s00016505.1	PF07847.7	DUF1637	73	279	2.60E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.953
SRR1783600	control	46.909
SRR1783602	moderate drought stress	18.477
SRR1811619	moderate drought stress	17.670

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.816
DRR006520	Root Summer glycyrrhizin high producing strain	44.590
DRR006521	Root Winter glycyrrhizin high producing strain	174.076
DRR006522	Root Winter glycyrrhizin high producing strain	171.116
DRR006523	Root Summer glycyrrhizin low producing strain	30.289
DRR006524	Root Summer glycyrrhizin low producing strain	30.054
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.898
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.792

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.154
SRR2868004	Drought Stress (root)	20.258
SRR2967015	Control (root)	15.681

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.051
SRR9715740	Leaf	8.414
SRR9715741	Leaf	9.967
SRR9715739	Root	22.459
SRR9715742	Root	48.311
SRR9715743	Root	38.412

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	64.818
SRR8749028	MeJA induced 9h	245.550
SRR8749029	MeJA induced 9h	148.938
SRR8749030	Uninduced	174.679
SRR8749031	Uninduced	237.603
SRR8749032	Uninduced	158.226

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	66.000
SRR8400027	Control - Root	64.652