Gene detail

Gene detail information of Glyur000286s00016498.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G28730.1	high mobility group
NR	XP_003517023.1	PREDICTED: FACT complex subunit SSRP1-like [Glycine max]
Swissprot	tr\|O04235\|SSRP1_VICFA	FACT complex subunit SSRP1
trEMBL	tr\|I1J7R6\|I1J7R6_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G33240.1}

Sequence

Transcript Sequence

>Glyur000286s00016498.1
AGTTCGGTGGCGCCACAGCTTTTCATATCACACCTTTGTTCTTCGCAGTGCAAAGAGTGTAGCTATAGAAGTTACCTTTGTTCCCTCTCTTGGTTGTTCTTCGGAGTCATGACGGACGGTCACCTCTTNAACAACATTACCCTCGGAGGTCGCGGCGGCATTAATCCAGGGCAGTTAAAAATATATTCTGGAGGAATTTTATGGAAGAGACAGGGGGGTGGGAAATTAATTGAAGTTGATAAAGCTGACATAATGGGCGTGACATGGATGAAGGTTCCTAGGACTAATCAACTTGGTGTTCAGATCAGAGATGGATTGTACTACAAATTCACTGGATTCCGTGATCAGGATGTTNTGAGCTTGACCAATTTTTTCCAAAACACCTTTGGAGTAACTGTAGAGGAGAAGCAGCTTTCTGTAAGTGGGCGCACTTGGGGAGAAGTTGATCTAAATGGAAATATGCTAGCTTTCATGGTCGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCGGATGTCTCTCAAACACAACTTCAAGGGAAAAATGATGTGAGCTTGGAGTTTCATGTAGACGACACAACTGGAGCTAATGAGAAAGATTCATTGATGGAGATAAGTTTCCATATACCGAGTTCCAACACCCAGTTTGTTGGTGATGAAAATCGTCCCCCTGCTCAAGTTTTCCGTGATAAAATAATGTCCATGGCTGATGTTGGTGCTGGAGGTGAAGATGCCGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGGGGACGATACAATGTTGAGTTACACCTGTCATTTTTGCGGCTTCAAGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAGCCACATACCTTCGTTGTCATTAGTCTTGATCCCCCTATTCGGAAAGGACAAACNTTGTACCCTCATATTGTGATGCAGTTCGAAACTGATTATGTGGTTCAAAGTGAATTGGCAATAAATGACGATCTTTATAACTCAAAATACAAAGACAAGTTGGAGCTGTCTTATAAGGGGCTCATCCATGAAGTGTTCACCACAATATTACGTGGCTTGTCTGGTGCCAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATCCTGTATCCACTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCCACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGTTCAAATATGCATTATTTTGACCTACTTATCAGACTAAAATCAGAGCAAGAGCATCTCTTCCGAAATATTCAGAGAAATGAATATCACAATTTGTATGGTTTTATCAGTTCAAAAGGCTTGAAAATTATGAATTTGGGAGATGCGCAACCAACTGTTGGTGTGGCTAAGGTTCTTGAGAATGATGATGATGATGCTGTGGATCCACATCTTGAGCGCATTAAAAATGAAGCTGGTGGAGATGAAAGTGANGAGGAGGATGAAGATTTTGTTGCTGACAAGGATGATGAAGGTTCTCCTACTGATGATTCTGGAGAAGACGATTCTGATGCTAGTGAAAGTGGTGGTGAGAAAGAGAAGCCCGCCAAAAAGGAACCAAAGAAGGATCTGTCTTCTAAGGCATCTACTTCTAAGAGGAAATCAAAAGATNCTGATGATGATGGAAAGAAGAAAAAACANAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCTGGTTTCATGTTCTTTTCTCAAATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGACTCGGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGTGGAGGAGAAAGAACCGTACGAGGCAAAAGCGCGAGCTGATAAAATACGCTATCAGGATGAGATTAGTGGCTACAAGAATCCACAACTCATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAAGGTTTTGCTTATTGTCATGACAAACAACTAATACAAGTCATGCTTTGTGATATTTCTAAAAGGTGATGGCATCTTCTGTGGTAAATTGACTCAAGTCTATGCTCTTTGGGCTGGCTGGCACTTGAACGTGCTCTGAGAGTACCATGAATGTCTGCTTGTTCGCATGGCTTAGGGATGGTAGGAGAAGGATGAGGTTTAAGTGCTTAGTTAATATAATTAGAGACATGTATTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00286	68670	75324	-

Gene family

Gene family	subfamily
Transcription Factors Family	HMG

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000286s00016498.1	PF03531.9	SSrecog	74	293	3.10E-104
Glyur000286s00016498.1	PF08512.7	Rtt106	349	440	4.30E-22
Glyur000286s00016498.1	PF00505.14	HMG_box	557	625	3.50E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.656
SRR1783600	control	17.287
SRR1783602	moderate drought stress	22.940
SRR1811619	moderate drought stress	22.749

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.132
DRR006520	Root Summer glycyrrhizin high producing strain	18.567
DRR006521	Root Winter glycyrrhizin high producing strain	15.644
DRR006522	Root Winter glycyrrhizin high producing strain	15.313
DRR006523	Root Summer glycyrrhizin low producing strain	26.094
DRR006524	Root Summer glycyrrhizin low producing strain	25.775
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.530
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.313

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.155
SRR2868004	Drought Stress (root)	36.864
SRR2967015	Control (root)	39.145

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.641
SRR9715740	Leaf	34.537
SRR9715741	Leaf	37.458
SRR9715739	Root	2.731
SRR9715742	Root	21.749
SRR9715743	Root	20.319

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.203
SRR8749028	MeJA induced 9h	23.924
SRR8749029	MeJA induced 9h	13.433
SRR8749030	Uninduced	7.260
SRR8749031	Uninduced	5.007
SRR8749032	Uninduced	4.494

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.860
SRR8400027	Control - Root	31.504