Gene detail

Gene detail information of Glyur000286s00016494

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15100.1	2.00E-99	Auxin efflux carrier family protein
NR	XP_004489373.1	0	PREDICTED: putative auxin efflux carrier component 5-like [Cicer arietinum]
Swissprot	tr\|Q9LFP6\|PIN5_ARATH	3.00E-124	Putative auxin efflux carrier component 5
trEMBL	tr\|M9WUH6\|M9WUH6_MEDTR	0	PIN11 {ECO:0000313\|EMBL:AGJ95049.1}

Sequence

Transcript Sequence

>Glyur000286s00016494.1
GGAACATAAACAAGATTTATGTTCATCAAAAAACATGCAGTAAGTTAACAGTTTCAGGGTATATGGATTATGGAGTTTGTTTATAACTTTATTGCACATGNAAAAAAAAAACCAAAGTAGCAATTTCAAATATATGATAAACCAATTTAAATAAATTATGGTGTTAAAAAGAAAGAAAAAAAGATAAAATTAGCTACCCAATTACCAAAACCAGACCTTTTTTTTTCTCCTTCTCAGAGAAAAGCNGGAGGCCATTATATGTTTATGAGAATAGAGAGCATAGAGAAAAGCCTGATGATAGGTCACTATGAAGAAGCATCTTCCAAAACAGATTATTCTATTCACTCAGTGTTTCAAAAATTCAACAAAGTAGCCTAGAAAGCATGCAACATTATTAACAATAACAACATAGCTTCTTATTATTATGCTGTAGATGTTGTCCTAAAAATCTTTGCAACAGTTAAGAGGCATATATCATTATATCATGATTTCCTTAGCTGATGTCTATCANGTAGTGACAGCAACTGTCCCATTATATGTGACCATGTTACTAGCCTACATCTCAGTGAAATGGTGGAAGCTCTTCACACCAGATCAATGTGCAGGCATAAACAAGTTTGTGGCAAATTTCTCAGTACCACTCTTGTCATTCCAAGTGATCTCTTCAAACAACATCTACAAGATGAGCCTGAAACTCATATATGCAGATTGTGTTCAGAAACTGCTTGCATTTTTAGCCTTAACAGCAATTATGAAGATCAGTGCAAGGGGAGGTTTGAAGTGGATCATAACTGGTCTCTCATTATCAACACTTCCTAACACCTTGATCCTTGGGATTCCACTCATGAAGGCTATGTATAGGGATGAAGCTGATGTTCTCCTTCCCCAGATTATCTTCTTGCAAAGCATGATCTGGTACAACTTNTTGTTGTTTCTTAATGAGCTTGATGCTGCTATTCCTGCAAGGACCATGCCTGCTTCACCACCATCACAAGGCACAGGAGAAAGCGAAACTTCTCAGGAAGTACAATCAAAGGAAGAAGAAGAGGAAGAAGCAGAACCACCTAGAACAGAAAGGAAAATGAGGATCTTGGTCATTCTTATGAAAGTGGGGAAGAAGTTAATCATGAATCCTAATACCTATGCAACTTTCATTGGTCTTATTTGGGCAAGCATACACTTCAGGTGGGGTGTGCATGTACCAGATGTTATTAATCAGTCAATAACAATATTGTCAAGTGGAGGTCTAGGNATGGCCACATTCAGCTTAGGTTTATTTATGGCATCAAACTCCAGCATTATAGCATGTGGGCCAAGGATGACAATGGTGGCAATGGGACTGAAATTTCTTGTTGGGCCTGCCTTAATGGCTGTAGCCTCCATTGCAGCCCTACCCCAAGGAATTGTTCCTTTTGTTTTTGCTAGAGAGTATAATGTCCATCCAGCAGTTTTAAGCACTGGGGTCTTACTAGGAATGCTCATTGCCTTGCCAGTGGCACTGACCTATTACCTCCTCTTATCACTCTGACACAACATGTTAGATACATATATACCAGGAACAATGAATGACCAAGCAGTTGCATTGGTGTAAAATAACAGTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00286	59224	62411	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000286s00016494.1	PF03547.13	Mem_trans	10	342	3.20E-91

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.074
SRR1783600	control	4.118
SRR1783602	moderate drought stress	1.909
SRR1811619	moderate drought stress	1.808

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.655
DRR006520	Root Summer glycyrrhizin high producing strain	4.827
DRR006521	Root Winter glycyrrhizin high producing strain	0.069
DRR006522	Root Winter glycyrrhizin high producing strain	0.067
DRR006523	Root Summer glycyrrhizin low producing strain	2.332
DRR006524	Root Summer glycyrrhizin low producing strain	2.298
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.254
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.200

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.536
SRR2868004	Drought Stress (root)	0.457
SRR2967015	Control (root)	0.567

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.857
SRR9715740	Leaf	0.229
SRR9715741	Leaf	0.358
SRR9715739	Root	0.147
SRR9715742	Root	0.844
SRR9715743	Root	1.396

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.003
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.885
SRR8400027	Control - Root	1.076