Gene detail information of Glyur000286s00016490 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62740.1 | 2.00E-143 | SPFH/Band 7/PHB domain-containing membrane-associated protein family |
| NR | KEH24971.1 | 0 | SPFH/band 7/PHB domain membrane-associated family protein [Medicago truncatula] |
| COG | YP_007201322.1 | 6.00E-103 | membrane protease subunit, stomatin/prohibitin [Singulisphaera acidiphila DSM 18658] |
| Swissprot | tr|Q9FM19|HIR1_ARATH | 0 | Hypersensitive-induced response protein 1 |
| trEMBL | tr|A0A072U6I0|A0A072U6I0_MEDTR | 0 | SPFH/band 7/PHB domain membrane-associated family protein {ECO:0000313|EMBL:KEH24971.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00286 | 46487 | 51137 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000286s00016490.1 | PF01145.20 | Band_7 | 8 | 182 | 3.00E-29 |
| Glyur000286s00016490.2 | PF01145.20 | Band_7 | 8 | 182 | 3.00E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 44.025 |
| SRR1783600 | control | 44.410 |
| SRR1783602 | moderate drought stress | 48.266 |
| SRR1811619 | moderate drought stress | 46.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 114.817 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 113.409 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 94.548 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 92.464 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 158.029 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 157.955 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 139.398 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 139.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 59.042 |
| SRR2868004 | Drought Stress (root) | 69.951 |
| SRR2967015 | Control (root) | 64.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 88.402 |
| SRR9715740 | Leaf | 88.085 |
| SRR9715741 | Leaf | 112.909 |
| SRR9715739 | Root | 39.920 |
| SRR9715742 | Root | 50.484 |
| SRR9715743 | Root | 48.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.299 |
| SRR8749028 | MeJA induced 9h | 47.213 |
| SRR8749029 | MeJA induced 9h | 26.158 |
| SRR8749030 | Uninduced | 65.333 |
| SRR8749031 | Uninduced | 47.333 |
| SRR8749032 | Uninduced | 40.478 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.277 |
| SRR8400027 | Control - Root | 36.278 |