Gene detail

Gene detail information of Glyur000286s00016486.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62670.1	0	H(+)-ATPase 11
NR	XP_002517457.1	0	H(+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
COG	YP_006722443.1	4.00E-92	cation-translocating P-type ATPase [Geobacter metallireducens GS-15]
Swissprot	tr\|Q9LV11\|PMA11_ARATH	0	ATPase 11, plasma membrane-type
trEMBL	tr\|B9RUL2\|B9RUL2_RICCO	0	H(+)-transporting atpase plant/fungi plasma membrane type, putative {ECO:0000313\|EMBL:EEF44999.1}

Sequence

Transcript Sequence

>Glyur000286s00016486.1
GTCCTTAAAAAGCTGCCACTTCAAGAGTTAGGACAAAAATACCGAAGCAGTGGAAACGGCACAGAACATGTGTGTATATGTTCTCTGTGTGATTTTGGGACTGAGAGGTTGAAGAAGAAAAACAGAGAAAGTGCTCTGTTTTCTCTGTGTGATTTTCTCTCTGGGTATTGAAATATTCACATAAAGCTTGCAACTTTGCTGTTAAGGAGAACCTAAAAGCTTTAGTTTTGGCTCAGATGGCTGACAAAGAAGAAGCCATGCATGCTGTTTTGAAGGAAGCTGTGGATTTGGAAAACGTGCCACTTGAGGAGGTGTTTCAGACTTTGAGGTGTGACTCAAATGGACTCACAACAGAGGGTGCTCAGGATAGGTTGGCCATCTTTGGCTACAACAAACTTGAGGAGAAGAAGGAGAGCAAGTTTTTCAAGTTTTTGGGATTTATGTGGAATCCTCTTTCATGGGTTATGGAAGCTGCAGCAATCATGGCAATTGCTTTGGCCAATGGAGGAGGTAAACCTCCTGATTGGCAAGACTTTGTTGGGATTATCACACTCCTCCTTATCAATTCAACAATAAGTTTCATAGAGGAGAACAATGCCGGTAATGCTGCTGCAGCTCTCATGGCTCGCCTAGCGCCCAAAGCTAAGGGAGAAATAGATGCTGTTGTGATTGCCACCGGAGTTCATACCTTTTTTGGCAAGGCTGCTCATCTTGTGGACTCTACAAATCAAGTCGGGCATTTTCAAAAGGCAAGGGCTGGTATTCAAGAGGTTCACTTCCTTCCCTTCAATCCGACTGACAAGNGAACTGCTCTTACTTACATAGACAGCGAAGGTAAAATGCATCGTGTCAGCAAAGGTGCGCCAGAACAGATTTTGAATCTTGCACATAATAAATCAGAGATAGAACGTAGAGTTCATGCNGTCATTGATAAGTTTGCGGAGCGGGGATTGCGGTCTCTTGCAGTAGCCTACCAGGAAGTTCCTGATGGAAGGAAAGAGAGCCAAGGAGGGCCTTGGCAGTTTATTGGACTCATGCCATTATTTGATCCACCTAGACATGATAGCGCAGAAACAATACGAAGGGCATTAAATCTTGGAGTAAATGTAAAAATGATAACAGGTGATCAACTAGCAATAGGAAAAGAAACAGGACGCCGTCTTGGGATGGGAACTAACATGTACCCTTCATCGGCTTTACTGGGCCAAAACAAGTATGAAACAATCGGTGCCTTGCCGGTTGATGATTTGATTGAAAAAGCCGATGGATTTGCTGGTGTTTTTCCTGAGCACAAATATGAGATTGTGAAACGTTTACAAGCTAGGAAACACATATGTGGAATGACTGGTGACGGGGTTAATGATGCTCCTGCTCTTAAAAAGGCAGATATTGGAATAGCTGTTGCTGATGCAACNGACGCAGCTCGTAGTGCTTCGGACATTGTTCTGACTGAACCAGGTCTCAGTGTTATCATCAGTGCTGTGCTGACCAGTCGAGCAATATTCCAGAGGATGAAGAATTACACGATCTATGCNGTTTCCATCACAATCCGTATTGTGCTTGGTTTCATGTTACTAGCCCTCATATGGCAATTTGATTTTCCACCGTTCATGGTGCTGATTATNGCCATTCTTAATGATGGTACCATTATGACAATATCCAAGGACAGGGTGAAACCATCTCCATATCCAGATAGCTGGAAGCTGGCGGAGATCTTTACCACTGGAGTAATTCTTGGTGGTTATTTGGCTATGATGACAGTTATTTTCTTCTGGGCAGCATATAAAACAGATTTTTTCCCTCGCAAATTTGGGGTCTCAAGTCTTCGGAAAGAGGACGAGGATGACTTCAGAAAGCTAGCCTCAGCAATATACCTACAAGTTAGCACAATCAGTCAGGCCCTCATATTTGTTACACGGTCACGGAGTTGGTCTTATGTTGAGCGCCCGGGNATTGGATGGGGTTGGGCTGGTGTAGTTTGGCTTTACAATCTCGTCTTTTACATCCCACTCGATTTCATCAAGTTCGTAATTCGATACGCCTTGAGCGGCAGGGCTTGGGATCTTGTTATTGAACAAAGGATTGCTTTCACAAGGAAAAAAGATTTCGGAAAGGAAGAACGCGAACTGAAATGGGCACATGCACAGAGGACACTTCATGGCCTTCACACACCAGAGACCAAGATACTGAGGGAGCTGCATACACTAAAGGGCCATGTTGAGTCAGTGGTTAGACTGAAGGGCCTTGATATTGACACAATACAGCAATCATACACTGTCTAAAATGTATCACTATGCTGCCAGTGGTGTGATGTGAGCAGCATATATAGAGCAGAAACAGAAACAANTATATATGCTATAAACCCATAGGAAAGTTTGTCCTCCATTCTATATATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00286	27071	35157	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01535	PMA1, PMA2	EC:3.6.3.6	Oxidative phosphorylation	map00190

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0000166 nucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000286s00016486.1	PF00690.21	Cation_ATPase_N	20	83	8.10E-14
Glyur000286s00016486.1	PF00702.21	Hydrolase	261	384	2.40E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	37.573
SRR1783600	control	38.065
SRR1783602	moderate drought stress	64.789
SRR1811619	moderate drought stress	64.078

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.848
DRR006520	Root Summer glycyrrhizin high producing strain	47.383
DRR006521	Root Winter glycyrrhizin high producing strain	37.092
DRR006522	Root Winter glycyrrhizin high producing strain	36.353
DRR006523	Root Summer glycyrrhizin low producing strain	60.349
DRR006524	Root Summer glycyrrhizin low producing strain	59.725
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.586
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.466

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.817
SRR2868004	Drought Stress (root)	44.393
SRR2967015	Control (root)	48.928

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.990
SRR9715740	Leaf	35.935
SRR9715741	Leaf	50.930
SRR9715739	Root	13.698
SRR9715742	Root	73.075
SRR9715743	Root	62.928

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.857
SRR8749028	MeJA induced 9h	12.426
SRR8749029	MeJA induced 9h	3.922
SRR8749030	Uninduced	18.396
SRR8749031	Uninduced	4.183
SRR8749032	Uninduced	6.564

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	85.189
SRR8400027	Control - Root	49.185