Gene detail information of Glyur000285s00030797 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01990.1 | 4.00E-166 | ACT domain repeat 6 |
| NR | XP_003549097.1 | 0 | PREDICTED: uncharacterized protein LOC100818506 isoform X1 [Glycine max] |
| COG | YP_001523254.1 | 1.00E-08 | PII uridylyl-transferase [Azorhizobium caulinodans ORS 571] |
| Swissprot | tr|Q9SGA0|ACR6_ARATH | 0 | ACT domain-containing protein ACR6 {ECO:0000305} |
| trEMBL | tr|I1MLF4|I1MLF4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G05830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00285 | 156876 | 161032 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000285s00030797.1 | PF01842.20 | ACT | 28 | 78 | 6.20E-08 |
| Glyur000285s00030797.1 | PF01842.20 | ACT | 117 | 166 | 1.20E-09 |
| Glyur000285s00030797.1 | PF01842.20 | ACT | 334 | 395 | 1.60E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.087 |
| SRR1783600 | control | 2.166 |
| SRR1783602 | moderate drought stress | 4.328 |
| SRR1811619 | moderate drought stress | 4.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.652 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.895 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.337 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.814 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.779 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.056 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.008 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.726 |
| SRR2868004 | Drought Stress (root) | 12.738 |
| SRR2967015 | Control (root) | 12.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.296 |
| SRR9715740 | Leaf | 15.768 |
| SRR9715741 | Leaf | 9.814 |
| SRR9715739 | Root | 1.531 |
| SRR9715742 | Root | 1.731 |
| SRR9715743 | Root | 2.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.091 |
| SRR8749028 | MeJA induced 9h | 2.467 |
| SRR8749029 | MeJA induced 9h | 1.732 |
| SRR8749030 | Uninduced | 3.224 |
| SRR8749031 | Uninduced | 1.271 |
| SRR8749032 | Uninduced | 1.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.095 |
| SRR8400027 | Control - Root | 6.096 |