Gene detail information of Glyur000284s00027072 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06300.1 | 2.00E-93 | Putative lysine decarboxylase family protein |
| NR | XP_004497673.1 | 2.83E-145 | PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7-like [Cicer arietinum] |
| COG | YP_003685251.1 | 6.00E-60 | hypothetical protein [Meiothermus silvanus DSM 9946] |
| Swissprot | tr|Q8GW29|LOG7_ARATH | 1.00E-130 | Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 |
| trEMBL | tr|I1L9I5|I1L9I5_SOYBN | 4.00E-144 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G09480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00284 | 103122 | 107679 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000284s00027072.1 | PF03641.9 | Lysine_decarbox | 53 | 182 | 6.00E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.172 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.123 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.143 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.795 |
| SRR2868004 | Drought Stress (root) | 21.294 |
| SRR2967015 | Control (root) | 9.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.457 |
| SRR9715740 | Leaf | 0.098 |
| SRR9715741 | Leaf | 0.059 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.164 |
| SRR8749028 | MeJA induced 9h | 0.918 |
| SRR8749029 | MeJA induced 9h | 0.793 |
| SRR8749030 | Uninduced | 0.658 |
| SRR8749031 | Uninduced | 0.635 |
| SRR8749032 | Uninduced | 0.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.627 |
| SRR8400027 | Control - Root | 0.867 |