Gene detail

Gene detail information of Glyur000283s00016963

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68170.1	2.00E-41	nodulin MtN21 /EamA-like transporter family protein
NR	KEH31275.1	2.71E-125	nodulin MtN21/EamA-like transporter family protein [Medicago truncatula]
Swissprot	tr\|F4HVM3\|WTR10_ARATH	2.00E-56	WAT1-related protein At1g68170
trEMBL	tr\|A0A072UZJ0\|A0A072UZJ0_MEDTR	1.00E-125	Nodulin MtN21/EamA-like transporter family protein {ECO:0000313\|EMBL:KEH31275.1}

Sequence

Transcript Sequence

>Glyur000283s00016963.1
ATGTGTCCAAAGCTACCTGAGTCAAGCCAGCCAGTGCTACAGTACCGGGAATGGGCTCGGATTGCATGTGCCGCGGTGAATATCATCTACAAGGTTGCCATAAATGATGGAATGAGCATGAGGGTAGCTACCGCCTACCGCCTCGCTTTTGCTTCGGCTTTCACTATTCCCGTTGCTCTTATCTTTGATAGGGGAAGTTTATTTCTAAACCTCGTCGCCGAGGGCCTGGCTTTGACTTCAGCAACGTTTATGTTGGCCATGCTCAACATTATTCCAGGCACCACCTTCATCATGGCCATATCCTCCCGATTGGAAAAATTAAATTGGGGAGTAGCAGAAGGAAAGGCCAAGGTGATAGGAACAACAATTGGAATTGGTGGGGCAATGCTGTTGACCTTTTTCAAAGGGGAAGAAATTAATATTTGGTCTTCCAAAATCAACCTTTTGCACTCACATCACAACCAAAATGGGCATATGGGGCCTCAACATAAAGACTTTAGTAATAAACTGTTGGGTGTTCCCTGTGCAATAGGAAGCGGGTGCTCTTATTCTCTGTGGTTAATCATTCAGGCTAAGATGAATGAAGAATACCCGAGCCATCATTCAAGCTCGGCTTTGATGTCCACAATGGGAGCGATACAGGCGATTGGAATTGTAACCACTGGAATAGTGGTTACTGTTACTGCCTGGTGCATAAAGATGAGAGGCCCTCTGTTTGTGTCTGTTTTCGGTCCTTTTCAGCTTTTACTTGTGGCCATCTCTGCTTCTTTGTTGTTGGATGAGAAGTTATATTTAGGAAGTGTGATTGGAGCAGTGCTAATCGTGTGTGGCCTATACACGGTGCTTTGGGGTAAGAACAAAGAATTGAAGAAGAGGACTCAGTTATCTATATATGCAGCGGTGAATATCTTGATAAAGATGGTAGCAAATGCTGGAATGAGTTTACATGTTCTTGTTGCATACCGATTCATCTTTTCTGCTGCTTTCATTGTTCCGTTTGCTCTCGAAAAACATGCAAAACCTTACTTGGAAAGTTCTATTCCAAGCTTCTCTTTGCTGGAGAAGCCAAATCTTGGAACACCAGGAGGGAAGGCCAAGTTGCTTGGAACTTTAGTAGGAATTGGTGGTGCCATGATCCTCTCTTTGTACAAAGGCAGAAAGTTATTCACCTGGTCAACGCACATTGACTTATTGCAACACGTGGCATCACCACCACAGGGTGCCCCCACTGGCCATCCTCGCTTCCTCTTGGGCCTCATGCTATCTATGGCCACTCCTCTTAGTTACTCCTCCTGGTTGATAGTCCAGGCAAAGATGAGTGAGAAGTTTCCGTGGCACTATTCAATTGCGGCTTTGACCTCTATAATGGCCGCAATCCAATCCATTATATTTGCACTTTGTACGGAGAGAGATTGGAGCCNATGGAAACTTGAATGGAACTTGATGCTTCTAGGAGCANCTTTCACGGGTATCTTGGGCTCTGGGGTGTGCATTACCCTGCTAGCATGGTGTGTGCGCTTGAAGGGAGCTCTGTATGTGTCTGCTTTTAGTCCTCTAATGCTTGTGCTAGTGGCCTTTGCCGGTCTAACAGGAGCTACGTTGATTGTGATCGGATTGTACATGTTNCTGTGGGGTAAAAGCAAAGAAACAAGGATGGCGGAGAGTGAGATGATATTGGTGTCCGAAAAGGACCATTCCCCGTTGCCAACTCATCTTTGGCTTGAGCGCGACANAAGATCGCAGCAAGTGTTGCTCCCGATACTTCATCGAGTGTTGATTGATTTATGCACTGTTGAAGCCATGGTCAACAGTGTGAAGCCTATTGTGGTAATGATAGTGGTCCAAGCTATATATGCAGCGGTGAATACCTTGTTCAAGATGGTAGCAAATGCNGGAATGAGCTTACATGTTCTTGTTGCCTACCGACTCATCTTTTCTGCTGCTTTCATTAACCTCTNCAGTAATGCTTTGGCNTTGTTGCCTACATTATATACTACAACCATGTTTAACCTCATCCCCGCTATTACCTACTTCATGGCCATTTCTCTAAGGCTGGAGAAGCCAAATCTTGAAACACCAGCTGGGAAGGCCAAGTTGCTTGGAACTTTAGTAGGAATTGGTGGTGCCATGATCCTCTCTTTGTACGAAGGAAAAAAGTTATTCACTTGGTCAATGCACATTGACTTATTGCAGCACGTGGCATCACCACCACAGGGTGCCCCCACTGGTTCTCGCTTGTGGGGCTTCATGCTCGCTTTGGCCGCTTCTCTGAGTTACTCCTCGTGGTTGATAATCCAGAGAGAGATTGGAGCCGATGGAAACTTGAATGGAANTTGGCATAACCTGTACAGTAATGCTTTGGCCTTGTTGCCTACATTATATACTACAACCATGTTCAACCTCATCCCCGCTATTACCTACTTCATGGCCATTTCTCTAAGGCTGGAGAAGCCAAATCTTGGAACACCAGCTGGGAAGGCCAAGTTGCTTGGAACTTTAGTAGGAATTGGTGGTGCCATGATCCTCTCTTTGTACGAAGGAAAAAAGTTATTCACTTGGTCAATGCACATTGACTTATTGCAACANGTGGCATCACCACCACAGGGTGCCCCCACTGGTTCTCGCTTGTGGGGCTTCGTGCTCGCTCTGGCCGCTTCTCTGAGTTACTCCTCGTGGTTGATAATCCAGTCAAAGATGAGTAAGAAGTTTCCATGGCACTACTCAATTGCGGCTTGGACCTCTATAATGGGCGCAATCCAATCCATTATATTTGCATTGTGTACAGAGAGAGATTGGAGCCGATGGAAACTTGAATGGAATTTGATGCTTCTATCAGCAGCTTTCTCGGGTATTTTTGGCTCGGGGGTGGTCATTACCCTAATAGCATGGTGTGTGCACTTGAAGGGGCCTCTGTTTGTTTCTGCTTTTAGTCCTCTAATGCTTGTGCTAGTGGCTTTTGCTGGTCTAACAGGAGCTACATTGATTGTGATCGGATTGTACATGTTATTGTGGGGTAAAAGCAAAGAAACAAGGATGGAGGAGAGTGAGATATTGGTGTCCAAAAAAGAGAGTGAGATATTGGTGTCCGAAAAAGACCCT

Protein Sequence

>Glyur000283s00016963.1
MCPKLPESSQPVLQYREWARIACAAVNIIYKVAINDGMSMRVATAYRLAFASAFTIPVALIFDRGSLFLNLVAEGLALTSATFMLAMLNIIPGTTFIMAISSRLEKLNWGVAEGKAKVIGTTIGIGGAMLLTFFKGEEINIWSSKINLLHSHHNQNGHMGPQHKDFSNKLLGVPCAIGSGCSYSLWLIIQAKMNEEYPSHHSSSALMSTMGAIQAIGIVTTGIVVTVTAWCIKMRGPLFVSVFGPFQLLLVAISASLLLDEKLYLGSVIGAVLIVCGLYTVLWGKNKELKKRTQLSIYAAVNILIKMVANAGMSLHVLVAYRFIFSAAFIVPFALEKHAKPYLESSIPSFSLLEKPNLGTPGGKAKLLGTLVGIGGAMILSLYKGRKLFTWSTHIDLLQHVASPPQGAPTGHPRFLLGLMLSMATPLSYSSWLIVQAKMSEKFPWHYSIAALTSIMAAIQSIIFALCTERDWSXWKLEWNLMLLGAXFTGILGSGVCITLLAWCVRLKGALYVSAFSPLMLVLVAFAGLTGATLIVIGLYMXLWGKSKETRMAESEMILVSEKDHSPLPTHLWLERDXRSQQVLLPILHRVLIDLCTVEAMVNSVKPIVVMIVVQAIYAAVNTLFKMVANAGMSLHVLVAYRLIFSAAFINLXSNALALLPTLYTTTMFNLIPAITYFMAISLRLEKPNLETPAGKAKLLGTLVGIGGAMILSLYEGKKLFTWSMHIDLLQHVASPPQGAPTGSRLWGFMLALAASLSYSSWLIIQREIGADGNLNGXWHNLYSNALALLPTLYTTTMFNLIPAITYFMAISLRLEKPNLGTPAGKAKLLGTLVGIGGAMILSLYEGKKLFTWSMHIDLLQXVASPPQGAPTGSRLWGFVLALAASLSYSSWLIIQSKMSKKFPWHYSIAAWTSIMGAIQSIIFALCTERDWSRWKLEWNLMLLSAAFSGIFGSGVVITLIAWCVHLKGPLFVSAFSPLMLVLVAFAGLTGATLIVIGLYMLLWGKSKETRMEESEILVSKKESEILVSEKDP

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00283	186638	215991	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000283s00016963.1	PF00892.15	EamA	208	282	8.50E-06
Glyur000283s00016963.2	PF00892.15	EamA	26	155	3.40E-10
Glyur000283s00016963.2	PF00892.15	EamA	201	328	3.30E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.898
SRR1783600	control	40.936
SRR1783602	moderate drought stress	52.835
SRR1811619	moderate drought stress	49.469

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.745
DRR006520	Root Summer glycyrrhizin high producing strain	24.424
DRR006521	Root Winter glycyrrhizin high producing strain	0.021
DRR006522	Root Winter glycyrrhizin high producing strain	0.078
DRR006523	Root Summer glycyrrhizin low producing strain	11.567
DRR006524	Root Summer glycyrrhizin low producing strain	11.593
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.266
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.257

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.708
SRR2868004	Drought Stress (root)	47.583
SRR2967015	Control (root)	63.665

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.178
SRR9715740	Leaf	0.911
SRR9715741	Leaf	1.019
SRR9715739	Root	11.107
SRR9715742	Root	56.794
SRR9715743	Root	47.298

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.057
SRR8400027	Control - Root	16.202