Gene detail

Gene detail information of Glyur000283s00016960

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68170.1	6.00E-40	nodulin MtN21 /EamA-like transporter family protein
NR	AFK45047.1	2.53E-120	unknown [Lotus japonicus]
Swissprot	tr\|Q4PT23\|WTR6_ARATH	7.00E-56	WAT1-related protein At1g25270
trEMBL	tr\|I3SXQ5\|I3SXQ5_LOTJA	9.00E-121	Uncharacterized protein {ECO:0000313\|EMBL:AFK45047.1}

Sequence

Transcript Sequence

>Glyur000283s00016960.1
GTTCTTTTTCTTTTCCAGGAAGAAGAGACCAAAGATTACTAGGAGTGTGCTTTCTAAGTCATTTCTATGTGGATTGTTTGGGTATGCGACGAAAATTCTTCACTTTTTTCGCCATATCATAAGTATTTTCAGTCCTTTATTGTCAATGCATGGTGCAAGGAAACAAAACTGAAATATTGTTATGTAATATTTCAGGGGAAGTCTATATCTAAACCTTTACCTCGAGGCCTTGGCTTTGACGTCAGCAACGTTTATGTTGGCCGTGGTCAATCTTATTCCAGCCATTACCTTCATCATGGCCGTATCCTCTGGATTGGATAAATTAAATTTGNGAGTAATAGAAGGAAAGGCCAAGGTGATAGGAACAATAATGGGAATTAGTGGCGCAATGATGATGACCTTCTACAAGGGGGTAGAAATCGATATTTGGTCTTCCAATATAAACCTTTTGCATCCAAGTGGGCATATGACACCGCATCATGCAGGTCTTCGTAATAAACTGTTGGGTGTTTCATGTGCCCTCGCAAGCAGCTGCTGTTTTTCATTATGGTTCATCATTCAGGCTAAGTTAAATGAAGAATGCCCAAGCCATAACTCAAGTGCAGCTTTAATGACCACAATGGGAGCGATTCAGGCCACTGTTATTGCTCTTTGTGTGGACAGGGACTGGAGCCAATGGAAGTTGAATAACAGTATCAGGATTCTAACTGTGGTTTATCCGGGAATCGTGGTCTCTGGAATAGTGGTTATTGCTATTGCCTGGTGCATAAGGATGAGGGGCCCTCTATTTGCGTCTGTTTTCAATCCGCTACAACTTTTTCTTGTGGCTATCGCTGCTTATTTGATGTTGGATGAGAAACTATATCTAGGATGCATGCTTGGAGCAGTGCTGATCGTGTGTGGTCTCTATGCTGTGCTTTGGGGTCAGAGCAAAGAAATGAAAAAGAAGACCAAGTTAGTGCCATTAGAAATCACCAAACTGTCTGAAAATGTTGAGCTTGTTGTTGTGCCCATGCCCCTACATCATAATAAATAATGTGTCCAAAGCTACCAGAGTCNAGCCAATGCTACCGGGAATGTTATTAATGATCAATGACTATTTATTAAAGAATGGATGGGACGCAGAGCATGATTTTCTCAAGAAGGAGAAAGAAGATGAACTACCCAATAATAAGATGGTTGAAATATTCTATCAAAAGTAACGAAAGTTTACCGCACAAAAAAGAAGCAAACAAACACATTAATAAGAATGTAAGCAATAGAGTGGCTGGTTTGCTTTTCATTAGTCCAGTTCTAACCATAATTGAATCTGGATCCTAAAAAATAAATATTAGAAAGAAGCAGCTATGCTATTCTCATN

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00283	175994	180200	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000283s00016960.1	PF00892.15	EamA	95	222	8.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.646
SRR1783600	control	1.652
SRR1783602	moderate drought stress	1.315
SRR1811619	moderate drought stress	1.314

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.740
DRR006520	Root Summer glycyrrhizin high producing strain	1.799
DRR006521	Root Winter glycyrrhizin high producing strain	4.586
DRR006522	Root Winter glycyrrhizin high producing strain	4.090
DRR006523	Root Summer glycyrrhizin low producing strain	2.595
DRR006524	Root Summer glycyrrhizin low producing strain	2.430
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.430
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.878

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.520
SRR2868004	Drought Stress (root)	10.121
SRR2967015	Control (root)	6.095

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.827
SRR9715740	Leaf	14.210
SRR9715741	Leaf	17.669
SRR9715739	Root	0.178
SRR9715742	Root	0.941
SRR9715743	Root	0.859

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.250
SRR8749028	MeJA induced 9h	0.154
SRR8749029	MeJA induced 9h	0.115
SRR8749030	Uninduced	0.184
SRR8749031	Uninduced	0.477
SRR8749032	Uninduced	0.201

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.432
SRR8400027	Control - Root	3.728