Gene detail information of Glyur000283s00016955 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12110.1 | 0 | actin-11 |
| NR | XP_003547582.1 | 0 | PREDICTED: actin-101-like [Glycine max] |
| COG | YP_003266114.1 | 7.00E-95 | actin/actin family protein [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|P53496|ACT11_ARATH | 0 | Actin-11 |
| trEMBL | tr|I1MDT4|I1MDT4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G05570.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00283 | 122088 | 126414 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000283s00016955.1 | PF00022.14 | Actin | 5 | 377 | 1.50E-158 |
| Glyur000283s00016955.2 | PF00022.14 | Actin | 5 | 377 | 1.50E-158 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 60.567 |
| SRR1783600 | control | 60.527 |
| SRR1783602 | moderate drought stress | 69.532 |
| SRR1811619 | moderate drought stress | 68.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 115.777 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 114.755 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.736 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.638 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 102.828 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 101.745 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.404 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 77.437 |
| SRR2868004 | Drought Stress (root) | 51.618 |
| SRR2967015 | Control (root) | 47.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.883 |
| SRR9715740 | Leaf | 10.075 |
| SRR9715741 | Leaf | 8.235 |
| SRR9715739 | Root | 91.730 |
| SRR9715742 | Root | 85.419 |
| SRR9715743 | Root | 86.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 46.055 |
| SRR8749028 | MeJA induced 9h | 12.713 |
| SRR8749029 | MeJA induced 9h | 19.470 |
| SRR8749030 | Uninduced | 3.668 |
| SRR8749031 | Uninduced | 0.936 |
| SRR8749032 | Uninduced | 2.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 74.393 |
| SRR8400027 | Control - Root | 71.266 |