Gene detail information of Glyur000283s00016948 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G43660.1 | 6.00E-38 | Vacuolar iron transporter (VIT) family protein |
| NR | XP_007159063.1 | 1.51E-105 | hypothetical protein PHAVU_002G205100g [Phaseolus vulgaris] |
| COG | YP_003817675.1 | 3.00E-38 | hypothetical protein Bresu_0737 [Brevundimonas subvibrioides ATCC 15264] |
| Swissprot | tr|Q9M2C0|VITH4_ARATH | 2.00E-86 | Vacuolar iron transporter homolog 4 |
| trEMBL | tr|V7CLG5|V7CLG5_PHAVU | 6.00E-106 | Uncharacterized protein {ECO:0000313|EMBL:ESW31057.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00283 | 97790 | 98473 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000283s00016948.1 | PF01988.14 | VIT1 | 41 | 221 | 6.30E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.230 |
| SRR1783600 | control | 0.195 |
| SRR1783602 | moderate drought stress | 1.197 |
| SRR1811619 | moderate drought stress | 1.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.363 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.470 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 109.563 |
| SRR2868004 | Drought Stress (root) | 71.353 |
| SRR2967015 | Control (root) | 28.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.413 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.093 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.122 |
| SRR8400027 | Control - Root | 3.379 |