Gene detail

Gene detail information of Glyur000283s00016938

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G19720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	KEH31249.1	dynamin-related protein 5B-2 [Medicago truncatula]
Swissprot	tr\|Q84N64\|ARC5_ARATH	Dynamin-like protein ARC5
trEMBL	tr\|A0A072UN67\|A0A072UN67_MEDTR	Dynamin-related protein 5B-2 {ECO:0000313\|EMBL:KEH31249.1}

Sequence

Transcript Sequence

>Glyur000283s00016938.1
ATGGAGGAAGAAAGAGAGCAGCAGCAACAGCATGAGGAGGAGGAGGAGGAGGAGGAGGGGTGGCGCCTGTACGAAGCGTACAATGAGCTCCACGCGCTCGCTCAGGAACTGCACACTCCCTTCGACGCCCCGGCGGTGCTGGTGGTGGGCCACCAAACCGACGGGAAGAGCGCCCTAGTGGAGGCCCTAATGGGCTTCCAGTTCAACCACGTTGGGGGAGGCACCAAGACCCGCAGGCCCATAACCCTCCACATGAAGTACGACCCACAATGCGAGTCCCCATCCTGCTCCCTCCTCTCCGATGACGACCCTTCCCTCTCCCACCAAATGTCACTCCCCCAAATCCAGGCCCACATCGAAGCCGAAAACGCCAGGCTGGAGCGTGACTCCTGTTGCCAGTTCTCCGCCAAGGAAATCATCATCAAGGTTGAATACAAGTACTGCCCCAACCTCACCATCATTGACACCCCGGGCCTCATTGCCCCTGCCCCCGGTCGAAAAAACCGGGCCCTCCAGGCCCAGGCCCGTGCCGTCGAGTCTCTCGTCCGTGCTAAGATGCAGCACAAGGAGTTCATTATACTCTGCCTTGAGGATTCCAGCGACTGGAGCAACGCCACCACAAGGCGCGTCGTCATGCAGATTGATCCAGAGCTGTCAAGGACTGTGATTGTGTCGACCAAGCTAGATACCAGGATACCTCAATTTGCACGTCCTTCCGATGTTGAGGTTTTCCTCTCGCCCCCTGCGTGTACGCTTGACGGCTGCATTCTGGGTGACTCTCCCTTCTTCACCTCCGTGCCATCTGGAAGAGTTGGTTCTGGAAGTGATTATCCCTACAGGTCCAATGATGAGTTCAAACAGGCGGTATGCTTCAGAGAGACAGAAGATGTTGCATCTTTGGAGGAGAAATTGGGCAGGCCATTGTCAAAACAAGAAAGAAGTAGGATAGGTGTGAGCCAACTTAGGTTGTTTCTGGAAGAAATGCTACAAAAAAGCACACTGGATGAAGCCAAGCTGAAGGAGANAGGAAGAACCTTCCATGATCTGTTCTTGACCAAGTTGTCATTGCTGCTTAAAGGGACAGTTGTTGCGCCACCTGATAAGTTTGGTAAGTTACCTAAGCTCTCTTTTATGGGTGAAACACTACAAGATGAGCGAATAAATGGAGGTGCATTTGTTGGTGCNGATGGTGTTCAGTTCCCTCACAAGCTAATACCTAATGCAGGGATGCGTCTTTATGGTGGTGCACAATATCATCGAGCAATGGCTGAATTTCGTTTTGTGGTTGGAGGAATCAAGTGCCCTCCAATTACTCGGGAAGAAATTGTAAACGCTTGTGGAGTTGAAGACATTCATGANGGAACAAACTACTCTAGGACTGCATGTGTAATTGCTGTTGCAAAGGCTCGTGACACATTTGAACCTTTTCTTCATCAGGTGTTTAATACTATAGAAAAAGATTGTGAGTATCTTAGTGGCCATCAGGTGTTCCTCAGGCGTGTTGCCTCTGCCTTCGACAACTTTGCAGAATCCACTGAAAAATCATGCCGTGAAAAATGTATGGAGGACTTGGTAAGCACTACACGATATGTATCATGGTCACTACACAATAAGAGTCGGGCTGGGTTACGTCAGTTCTTAGATTCATTTGGTGGAACAGAACATTCCAATGTTTGTAATAATCCTACCGCAACTGAAACAAATGCACAAGAGAAAGAAGACACAAAGCCACAGCCAGATGTAAGGCTCAGTCATGTGGCCTCCGGGGCTGATTCTAGCACATCCACTCAGACAACCGAAACAAAGCTTGCTGACCTTTTGGATAGTACACTTTGGAACCGGAGGCTTGCTCCTTCATCTGAAAGGATTGTTTATGGTTTGGTACAACAGATATTTCATGGCATAAGAGAATATTTCTTGGTTTCCACAGAATTAAAGTTCAACTGTTTCCTCTTGATGCCCATTGTGGACAAGTTGCCTGCACGCCTTCGGGAAGACCTAGAATCATCTTTTGAAGATGACCTGGAAAATGTTTTTGACATAACCAATCTGCAGCACTTATTGGGGCAGCAGAAGAGAGATACAGAAATTGAGCTGAAAAGGATCAAGAGGCTCAAAGAGAAATTCAGAATGATACACGAGCAGCTAATTCTACGTCAAGCCGTGTGAATATGGGAGCCACTGTTGGATATGCCGAATGTAATTTTGCTTCATATGAAATAGGCATGTGATTTAAAGATTTATGAGATTTATGATTTTTCATTTCTTCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00283	37643	44438	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000283s00016938.1	PF00350.18	Dynamin_N	46	228	1.30E-33
Glyur000283s00016938.2	PF00350.18	Dynamin_N	46	228	1.30E-33
Glyur000283s00016938.3	PF00350.18	Dynamin_N	46	228	1.30E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	48.529
SRR1783600	control	48.237
SRR1783602	moderate drought stress	51.741
SRR1811619	moderate drought stress	51.440

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.216
DRR006520	Root Summer glycyrrhizin high producing strain	33.613
DRR006521	Root Winter glycyrrhizin high producing strain	16.905
DRR006522	Root Winter glycyrrhizin high producing strain	16.295
DRR006523	Root Summer glycyrrhizin low producing strain	23.259
DRR006524	Root Summer glycyrrhizin low producing strain	23.323
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.166
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.780

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.144
SRR2868004	Drought Stress (root)	15.049
SRR2967015	Control (root)	18.896

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.911
SRR9715740	Leaf	12.186
SRR9715741	Leaf	6.457
SRR9715739	Root	13.265
SRR9715742	Root	41.802
SRR9715743	Root	40.549

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.159
SRR8749028	MeJA induced 9h	12.654
SRR8749029	MeJA induced 9h	15.615
SRR8749030	Uninduced	2.572
SRR8749031	Uninduced	1.156
SRR8749032	Uninduced	2.738

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	79.464
SRR8400027	Control - Root	76.640