Gene detail

Gene detail information of Glyur000283s00016932

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64570.1	0	beta-D-xylosidase 4
NR	KEH31243.1	0	beta-xylosidase/alpha-L-arabinofuranosidase-like protein [Medicago truncatula]
COG	YP_004464029.1	2.00E-144	glycoside hydrolase [Mahella australiensis 50-1 BON]
Swissprot	tr\|A5JTQ3\|XYL2_MEDSV	0	Alpha-L-arabinofuranosidase (Precursor)
trEMBL	tr\|A0A072UQA9\|A0A072UQA9_MEDTR	0	Beta-xylosidase/alpha-L-arabinofuranosidase-like protein {ECO:0000313\|EMBL:KEH31243.1}

Sequence

Transcript Sequence

>Glyur000283s00016932.1
ATGGCCTATGCTCAAAACAGAGCACCGAAGGTCTCTGTTTTGCTCTGTTTTGTGACCCTGTTTGCCACAATTCTGTTGAGTTGTGGTGGAGTTTGGGGCCAAACATCTCCCATTTTCGCCTGCGATGTATCCAAGAACCCGGCACTGGCGGGTNTCGGGTTCTGCGACAAGTCACTGAGGGTGGAAGCGAGGGTGACAGACCTTGTGGGGAGGTTGACATTGCAGGAGAAGATTGGGAACCTTGTGAACTCTGCTGTGGATGTTAGCAGGCTTGGGATTCCAAGGTATGAATGGTGGTCTGAGGCACTTCATGGAGTCTCCAACGTTGGCCCAGGGACGCGTTTCTCCAATGTGGTACCTGGAGCTACCAGTTTCCCCATGCCTATTCTCATTGCTGCTTCTTTCAATGCTTCCTTGTTCCAAACCATTGGAAGGGTGGTTTCAACGGAGGCAAGAGCAATGCACAATGTGGGGTTGGCTGGTTTGACATATTGGTCACCAAACATTAACATATTCAGGGATCCAAGATGGGGAAGAGGTCTAGAGACNCCAGGGGAAGACCCTTTACTCGCTAGCAAATATGCAGTAGGGTACGTGAAAGGTCTACAACAAACTGATGATGGAGACCCCAACAAACTCAAGGTTGCTGCTTGCTGCAAACACTATACAGCCTATGATGTAGATAACTGGAAAGGTGTTCAGCGTTACACCTTCAATGCTGTGGTATCACAGCAAGATTTGGATGACACATTCCAACCACCGTTTAAGAGCTGTGTGATTGATGGGAATGTTGCCAGTGTCATGTGTTCCTACAACAAGGTTAATGGAAAGCCAACCTGTGCTGACCCTGACCTCCTTAAGGGTGTTATCCGAGGCCAATGGAAACTCAATGGATATATTGTTTCTGACTGTGACTCAGTAGAAGTGCTTTACAAAGATCAGCACTATACCAAAANTCCTGAGGAAGCTGCAGCCAAATCCATTCTGGCAGGATTGGATTTGAACTGTGGAAGATTTCTTGGCCAATATACAGAAGGTGCTGTGAAGCAAGGGCTTATAGATGAAGCATCCATTAACAAAGCAGTCTCCAACAATTTCGCCACGCTGATGCGCCTCGGTTTCTTTGATGGCGATCCTAGCAAGCAACCTTATGGGAACCTTGGTCCAANAGATGTCTGCACTTCAGCAAACCGGGAGCTGGCACGTGAAGCTGCAAGGCAAGGGATTGTGTTGCTCAAAAACAGTCCAGGATCATTGCCTCTTAATGCCAAAGCCATTAAGTCATTGGCAGTTATTGGGCCAAATGCCAATGCTACTAGGACCATGATTGGAAACTATGAAGGCATCCCATGCAAATACACATCACCCTTGCAAGGCCTAACAGCCTTAGTTCCTACAAGCTTTGCTGCTGGCTGCCCTGATGTGCACTGCACCAATGCAGTACTTGATGATGCCAAAAAGGTCGCAGCCTCCGCGGACGCGACCGTGATTGTGGTGGGCGCGAGTCTCGCGATAGAGGCAGAGAGTCTTGACAGGGTCAACATCCTTCTCCCGGGACAGCAGCAACTGTTAGTTACTGAAGTTGCAAATGTATCCAAGGGACCTGTGATTCTTGTCATAATGTCTGGAGGAGGCATGGATGTGTCCTTTGCTAAAACCAATAACAAAATCACAAGCATCTTGTGGGTTGGCTATCCTGGAGAAGCTGGTGGAGCTGCCATAGCTGATGTGATCTTTGGGCTACCCATAACATGGTATCCACAATCATATGTAGACAAAGTACCAATGACCAATATGAACATGAGGCCTGATCCTGCCACAGGCTACCCTGGTAGAACATACAGATTTTACAAAGGAGAAACTGTTTTCTCATTTGGGGATGGAATAAGCTACTCCAGTTTTGAGCACAAATTAGTTAAGGCACCTCAGTTGGTGTCTTTTCCCTTGGCTGAGGACCATGTGTGCCGTTCCTCAGAATGCACTTCACTTGATGGTGTTGGTGAGCATTGTCAAAACTTGGCCTTTGATATTCACCTAAGGGTCAAGAACAAGGGGGGAATGAGCAGCAGTCACACTGTGTTTTTGTTCTATACACCTCCTGAAGTGCACAATGCACCCCAGAAACACTTGCTGGCTTTTGAGAAAGTTCACTTGACAGCAAAATCAGAAGCACTAGTTAGGTTCAAAGTTGATGTTTGTAGNGATTTGAGTGTGGTTGATGAGCTTGGCAATAGAAAAGTTGCCTTAGGACAGCATCTACTTCATGTAGGAGACTTGAAGCTTCCTTTGGGTTTGAAGATTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00283	3189	6974	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15920	XYL4	EC:3.2.1.37	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000283s00016932.1	PF00933.16	Glyco_hydro_3	72	363	1.50E-62
Glyur000283s00016932.1	PF01915.17	Glyco_hydro_3_C	409	632	2.00E-40
Glyur000283s00016932.1	PF14310.1	Fn3-like	691	758	3.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.609
SRR1783600	control	0.619
SRR1783602	moderate drought stress	0.477
SRR1811619	moderate drought stress	0.468

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.394
DRR006520	Root Summer glycyrrhizin high producing strain	1.419
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.071
DRR006524	Root Summer glycyrrhizin low producing strain	0.964
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.403
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.442

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.857
SRR2868004	Drought Stress (root)	24.167
SRR2967015	Control (root)	25.967

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.072
SRR9715740	Leaf	0.143
SRR9715741	Leaf	0.517
SRR9715739	Root	1.275
SRR9715742	Root	0.668
SRR9715743	Root	0.863

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.154
SRR8400027	Control - Root	8.411