Gene detail information of Glyur000282s00015777 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72160.1 | 1.00E-115 | Sec14p-like phosphatidylinositol transfer family protein |
| NR | XP_003522462.1 | 0 | PREDICTED: patellin-3-like [Glycine max] |
| Swissprot | tr|Q56Z59|PATL3_ARATH | 3.00E-157 | Patellin-3 |
| trEMBL | tr|K7KLB5|K7KLB5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G38261.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00282 | 205931 | 209533 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000282s00015777.1 | PF03765.10 | CRAL_TRIO_N | 270 | 299 | 1.70E-08 |
| Glyur000282s00015777.1 | PF00650.15 | CRAL_TRIO | 322 | 425 | 6.00E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 197.177 |
| SRR1783600 | control | 189.484 |
| SRR1783602 | moderate drought stress | 167.171 |
| SRR1811619 | moderate drought stress | 165.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 145.578 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 143.684 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 192.454 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 186.660 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 175.760 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 173.602 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.202 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 151.115 |
| SRR2868004 | Drought Stress (root) | 113.159 |
| SRR2967015 | Control (root) | 115.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.061 |
| SRR9715740 | Leaf | 20.758 |
| SRR9715741 | Leaf | 26.711 |
| SRR9715739 | Root | 132.207 |
| SRR9715742 | Root | 169.495 |
| SRR9715743 | Root | 155.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.627 |
| SRR8749028 | MeJA induced 9h | 24.545 |
| SRR8749029 | MeJA induced 9h | 31.608 |
| SRR8749030 | Uninduced | 8.153 |
| SRR8749031 | Uninduced | 2.986 |
| SRR8749032 | Uninduced | 2.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 165.588 |
| SRR8400027 | Control - Root | 202.693 |