Gene detail

Gene detail information of Glyur000282s00015773.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38620.1	2.00E-67	myb domain protein 4
NR	XP_007137818.1	2.46E-136	hypothetical protein PHAVU_009G158200g [Phaseolus vulgaris]
Swissprot	tr\|Q38851\|MYB6_ARATH	3.00E-85	Transcription repressor MYB6
trEMBL	tr\|V7AVZ1\|V7AVZ1_PHAVU	9.00E-137	Uncharacterized protein {ECO:0000313\|EMBL:ESW09812.1}

Sequence

Transcript Sequence

>Glyur000282s00015773.1
ACACAGAAAAAGAAGGTCCCCGAGTCAATTGCACCTCGTCTTCCTCTCCACCACCTCCCATTTATATTCCTTTTTCCCCCTTTCTCTTTTCTCACCAATTACTTTCCCAGGTTCCATTCCATTCCCCCACATAAACAAATCTCATACCACTACTACTTCCTCTCTCTCTCAATTTCTCAACAACTAACAACAACAACAACCAATATTATTGATATGGGTAGATCCCCTTGTTGCGAGAAAGAGCACACCAACAAAGGAGCTTGGACCAAAGAAGAAGATGAACGCCTCATCAACTACATCAAGATTCACGGCGAAGGCTGTTGGAGATCTCTCCCAAAAGCTGCAGGGTTGCTGAGATGTGGCAAGAGTTGCAGACTCAGATGGATAAATTACCTGAGACCTGATCTAAAGCGAGGAAACTTCACCGAAGATGAAGATGAACTCATCATCAACCTCCACAGCTTACTCGGTAACAAGTGGTCTCTAATAGCAGCGAGGTTACCGGGAAGAACTGATAACGAGATAAANAACTACTGGAACACCCACATCAAGCGAAAACTCTACAGCCGCGGAATCGACCCACAAACCCATCGACCACTCAACGGCAACGCCGCCCCATCGCCGGCCACCGCAGCAGTTCCACCTCCTAATAATAATGCTGCTGCAGTGTCTCAAATCACCAAAAGCAACAGCAATAACAANAAGATGAACAACAACGATAATAGCATTAGCAGCAACAACAACAATAACAATAACGGCGGTTTTCAGTTAGCGAGTGGCTATGCTATTGGAACCGACTTGGTTTGTGAGGACTCATCGAATAGTAGCAGCGGCGTTACCACAGAGGAAACATATCCTCATCAACAACTCAACTTGGACCTTTCCATTGGCCTTCCCTCACTTCAGCCAGCTCAAGTTTCTCCTGTGAACCCAGATAAGTTGAAACAACAACAACAACAAGAACAAGGTGAGCAACCAAAGGTTATGTACCAGTGGTATGGGAACGTTAGTAGTGGTCAAGGTGTGTGCCTTTGTTACGGTCTAGGGTTTCAGAGCAACCAACCTTGTTGCTGCAAAGCCTATAGATTTTACAGACCCATGAATATTTAGAACCTGATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00282	177978	179456	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB
EAR motif-containing Proteins	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000282s00015773.1	PF00249.26	Myb_DNA-binding	14	61	1.80E-15
Glyur000282s00015773.1	PF00249.26	Myb_DNA-binding	67	111	5.70E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.202
SRR1783600	control	11.071
SRR1783602	moderate drought stress	8.981
SRR1811619	moderate drought stress	9.048

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.040
DRR006520	Root Summer glycyrrhizin high producing strain	5.061
DRR006521	Root Winter glycyrrhizin high producing strain	1.471
DRR006522	Root Winter glycyrrhizin high producing strain	1.445
DRR006523	Root Summer glycyrrhizin low producing strain	17.777
DRR006524	Root Summer glycyrrhizin low producing strain	18.204
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.428
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.474

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.098
SRR2868004	Drought Stress (root)	44.932
SRR2967015	Control (root)	35.805

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.134
SRR9715740	Leaf	10.048
SRR9715741	Leaf	12.534
SRR9715739	Root	2.287
SRR9715742	Root	8.609
SRR9715743	Root	8.011

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.532
SRR8749028	MeJA induced 9h	11.294
SRR8749029	MeJA induced 9h	10.882
SRR8749030	Uninduced	64.856
SRR8749031	Uninduced	16.939
SRR8749032	Uninduced	6.502

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.998
SRR8400027	Control - Root	29.808