Gene detail information of Glyur000282s00015770 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23060.1 | 1.00E-06 | RING/U-box superfamily protein |
| NR | XP_007049948.1 | 8.96E-16 | RING finger protein, putative, partial [Theobroma cacao] |
| Swissprot | tr|Q9M9Y4|DRIP1_ARATH | 8.00E-07 | E3 ubiquitin protein ligase DRIP1 |
| trEMBL | tr|A0A061DN33|A0A061DN33_THECC | 3.00E-16 | RING finger protein, putative {ECO:0000313|EMBL:EOX94105.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00282 | 157881 | 159075 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.281 |
| SRR1783600 | control | 0.203 |
| SRR1783602 | moderate drought stress | 0.104 |
| SRR1811619 | moderate drought stress | 0.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.843 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.013 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.653 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.161 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.046 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.838 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.018 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.271 |
| SRR2868004 | Drought Stress (root) | 6.033 |
| SRR2967015 | Control (root) | 2.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.552 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.054 |
| SRR9715739 | Root | 0.421 |
| SRR9715742 | Root | 0.935 |
| SRR9715743 | Root | 0.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.736 |
| SRR8400027 | Control - Root | 1.982 |