Gene detail information of Glyur000282s00015766 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17270.1 | 0 | Protein prenylyltransferase superfamily protein |
| NR | XP_004503019.1 | 0 | PREDICTED: tetratricopeptide repeat protein 27 homolog [Cicer arietinum] |
| COG | YP_502382.1 | 3.00E-08 | hypothetical protein Mhun_0913 [Methanospirillum hungatei JF-1] |
| trEMBL | tr|G7J2N4|G7J2N4_MEDTR | 0 | Protein prenylyltransferase superfamily protein {ECO:0000313|EMBL:AES72949.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00282 | 115397 | 124680 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000282s00015766.1 | PF13414.1 | TPR_11 | 585 | 644 | 1.90E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.364 |
| SRR1783600 | control | 10.117 |
| SRR1783602 | moderate drought stress | 12.912 |
| SRR1811619 | moderate drought stress | 12.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.434 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.132 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.651 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.779 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.350 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.334 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.106 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.182 |
| SRR2868004 | Drought Stress (root) | 13.678 |
| SRR2967015 | Control (root) | 14.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.409 |
| SRR9715740 | Leaf | 8.767 |
| SRR9715741 | Leaf | 6.851 |
| SRR9715739 | Root | 2.937 |
| SRR9715742 | Root | 13.048 |
| SRR9715743 | Root | 11.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.140 |
| SRR8749028 | MeJA induced 9h | 24.665 |
| SRR8749029 | MeJA induced 9h | 11.414 |
| SRR8749030 | Uninduced | 3.207 |
| SRR8749031 | Uninduced | 1.387 |
| SRR8749032 | Uninduced | 2.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.234 |
| SRR8400027 | Control - Root | 19.171 |