Gene detail

Gene detail information of Glyur000282s00015763.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G35670.1	0	calcium-dependent protein kinase 2
NR	XP_004503020.1	0	PREDICTED: calcium-dependent protein kinase SK5-like [Cicer arietinum]
COG	YP_642814.1	4.00E-30	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|P28583\|CDPK_SOYBN	0	Calcium-dependent protein kinase SK5
trEMBL	tr\|V7AZ01\|V7AZ01_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW09833.1}

Sequence

Transcript Sequence

>Glyur000282s00015763.1
CTTGACCCTGTCTTCTTTCTCTCCTTTTTCTTTCTTTCTTTGTTTCGTGTTGTTCGGAACCCAACACAGTACAGAACAGGAGAGAGTGAGTGAGGACAGAAGACAACAACGTGAACAATGTCGAAATCGAACACGGTGGTACCACCGAAACCCACTTGGGTTCTCCCGTACCGAACGGAGAACCTGAGAGAAGTATACACACTGGGTAGAAAGCTAGGCCAGGGTCAATTCGGAACCACATACCTATGCAGGCACAACTCAACGGGTCAAACCTACGCGTGCAAGTCAATCCCAAAGAAGAAGCTTCTGTGCAAAGAGGACTACGACGACGTTTGGAGGGAGATTCAGATAATGCATCACTTGTCTGAACACCCAAACGTGGTGAGGATCTACGGTACCTATGAGGACCCTCTCTCTGTTCACCTTGTGATGGAGCTTTGTGAGGGTGGTGAGTTGTTCGATAGGATCGTGCAGAAGGGTCATTACAGTGAGAGACAGGCTGCGAAGCTGATTAAGACCATTGTTGAGGTTGTTGAGGCTTGTCATTCTCTTGGGGTCATGCATAGAGACCTTAAACCTGAGAACTTCTTGTTTGATACTGTTGAAGAAGATGCTAAGCTCAAAACCACTGATTTTGGGTTGTCTGTTTTTTACAAGCCAGGTGAAACCTTTACTGATGTTGTTGGAAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCATTATGGACCTGAATCAGACGTGTGGAGTGCTGGGGTTATTTTGTACATCTTATTAAGCGGGGTGCCACCATTTTGGGCTGAAACAGAGCAGGGGATCTTCCGACAGATTTTACTGGGAAGACTTGATTTCCAGTCTGAGCCATGGCCTGGGATTTCAGACAGCGCCAAGGANCTAATTCGAAAAATGCTTGATCGGAATCCGAAAACAAGGTTTACAGCTCACCAAGTACTCTGCCACCCATGGATTGTTGATGACAACATTGCACCAGATAAACCTATTGATTCNGCTGTTTTATCACGCCTGAAGCAATTCTCTGCAATGAACAAACTTAAAAAGATGGCACTGCGTGTTATTGCAGAGAGACTTTCTGAGGAAGAAATTGGTGGTCTGAAGGAGTTATTCAAGATGATTGATGCTGACAACAGTGGAACTATCACATTTGATGAGCTAAAAGAAGGCTTAAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTTATGGATGCAGCAGATATTGATAATAGCGGGACACTTGACTATGGTGAATTCATTGCTGCTACTGTCCACTTAAATAAGCTGGAGAGAGAGGAAAACCTGTTGTCAGCGTTCTCCTATTTTGACAAAGATGGAAGTGGTTACATAACCATTGATGAGATACAACAAGCTTGTAAGGATTTTGGTTTGAATGATGTCCATATTGATGAAATTGTCAAGGAAATTGATCAAGACAACGATGGACAAATAGATTATGGGGAATTTGCTGCCATGATGAGAAAGGGCAATGGAGGGATCGGAAGGCGAACCATGAGAAGCACACTCAACTTCAGAGATGCCCTGGGAATCATAGGCAATGGGTCCAATTAAGTTGTTGTACCTTAAAGTAATAATTTGGTGATAACAATTTTGGACGAGGAAAACTTTTGTAACTTTCAAACATTGTCGGTAGCCTGACCAAAATTTGCATTTATGAAATAGACCCATCATTCTAAATTGTTCCTTTGGATGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00282	102302	107315	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13412	CPK	EC:2.7.11.1	Plant-pathogen interaction	map04626
			Toxoplasmosis	map05145

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005509 calcium ion binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000282s00015763.1	PF00069.20	Pkinase	27	285	8.40E-75
Glyur000282s00015763.1	PF13499.1	EF-hand_7	333	392	1.20E-12
Glyur000282s00015763.1	PF13499.1	EF-hand_7	405	463	2.20E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	47.083
SRR1783600	control	47.685
SRR1783602	moderate drought stress	37.185
SRR1811619	moderate drought stress	36.820

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	60.462
DRR006520	Root Summer glycyrrhizin high producing strain	59.954
DRR006521	Root Winter glycyrrhizin high producing strain	17.095
DRR006522	Root Winter glycyrrhizin high producing strain	16.757
DRR006523	Root Summer glycyrrhizin low producing strain	55.171
DRR006524	Root Summer glycyrrhizin low producing strain	55.054
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.615
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.603

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.643
SRR2868004	Drought Stress (root)	41.834
SRR2967015	Control (root)	45.279

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.939
SRR9715740	Leaf	22.678
SRR9715741	Leaf	26.911
SRR9715739	Root	10.005
SRR9715742	Root	29.503
SRR9715743	Root	25.249

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.075
SRR8749028	MeJA induced 9h	41.146
SRR8749029	MeJA induced 9h	40.233
SRR8749030	Uninduced	15.487
SRR8749031	Uninduced	2.750
SRR8749032	Uninduced	4.320

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.971
SRR8400027	Control - Root	51.556