Gene detail information of Glyur000282s00015761 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04290.1 | 1.00E-45 | Thioesterase superfamily protein |
| NR | XP_003602708.1 | 8.51E-71 | Acyl-coenzyme A thioesterase [Medicago truncatula] |
| COG | YP_003953140.1 | 6.00E-17 | hypothetical protein STAUR_3523 [Stigmatella aurantiaca DW4/3-1] |
| trEMBL | tr|G7J2P4|G7J2P4_MEDTR | 3.00E-71 | Acyl-coenzyme A thioesterase-like protein {ECO:0000313|EMBL:AES72959.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00282 | 96385 | 99183 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000282s00015761.1 | PF03061.17 | 4HBT | 65 | 138 | 4.80E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.670 |
| SRR1783600 | control | 12.750 |
| SRR1783602 | moderate drought stress | 5.460 |
| SRR1811619 | moderate drought stress | 5.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.740 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.164 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.004 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.789 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.611 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.957 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.341 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.902 |
| SRR2868004 | Drought Stress (root) | 32.397 |
| SRR2967015 | Control (root) | 30.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.150 |
| SRR9715740 | Leaf | 18.277 |
| SRR9715741 | Leaf | 15.098 |
| SRR9715739 | Root | 5.363 |
| SRR9715742 | Root | 8.698 |
| SRR9715743 | Root | 7.351 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.574 |
| SRR8749028 | MeJA induced 9h | 29.810 |
| SRR8749029 | MeJA induced 9h | 29.200 |
| SRR8749030 | Uninduced | 15.795 |
| SRR8749031 | Uninduced | 6.835 |
| SRR8749032 | Uninduced | 8.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.846 |
| SRR8400027 | Control - Root | 25.427 |