Gene detail

Gene detail information of Glyur000282s00015759

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G08500.1	Transmembrane CLPTM1 family protein
NR	KHN31230.1	Cleft lip and palate transmembrane protein 1 [Glycine soja]
trEMBL	tr\|I1JXT8\|I1JXT8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G38120.1}

Sequence

Transcript Sequence

>Glyur000282s00015759.1
AATTGAGATCCTCAAGCGGTCTAAAAACNAAGTGCAGGAGATCTCAAGGCAAGTGGGGGAACATAGCGTGGCCACCCAGTTCCAAAACAAAATTCCTCTCACTCACTACTATAATATCATATCAATATTCATATCATATATATACGTCGGCAACACCACCTTCCTATCCTAGTAGAAGACTACAACTAATACTAGTAGCATCCGTTTCAAATCTTCGATTCCATCGCTCTCTCTCTCTCTGCCGAAGATGGCGCCGCCTGCGGCAGCAGTAGTTGAAGGCGGTGGTGCTGCACCGCAACCGCAAGGGAGACAGCAAGGAGGTTTTGGCCTCACCGGAATCATTCGCATGGTCGTTTTCTGGTATTTCGCCTCCAAATTCTTCTCTCCCAAAAAGCCTGCCGAACCTTCTTCCGCTCTCATCTCCAACCTCTTCCACAAAGCTCAACCTCTGGATATGTGGCTTTATGTCTCCGAGCACGAGAAGTTCAATGACTTTGGTCGTGAAAGTGCTCTTTTATGGCATGAAACCAATATTCCATATGCCGTTTGGGGACCTGAGAGTACCAGGTCTCTTAGTTTGAAGTATCATCCATCTGAGTCTTTGAAACACAATGGGAGTCTATATGCTCATGTTTTCTTTGCACATTCTGGATACTCACCTGACCCAAGCGATCCGGAATACCAGCCTCAGGCAGCATTTGGGAGGACGCATCCTGTTGTGATATACTTGCCCAAGTCAAAAGCAGATAAAAAGAAGAGTCTGTTGGGAGGTTCGCCTGATTCTAGTGAGGGTCAAGTGACATCCGAGGTGGTTGAGGAAACTGAAGATGATTCTAAGGATGATGGTCCTGTGGAGTGGGTTTCATATTGGAAACCAAATATTACAATAAACTTGGTTGCTGACTTCACTCAGTATGTTTCTTGGAATTCATTACATTTGTACCCAAAAACAGGCATACCACCAAACATCGCTCCATACTTGAACATTGATCCTGTCACTGGGGACTACTATCCAACTGTTTTCTTCAATGAGTTCTGGTTACTCAGGGATAAGTTGATACCTTTGAATGAGACAGTAACTGAGTTATCACTTAATCTGGAAGTTGGTCCCATTAGTATGACAAAATGGCAATTATTCCTGCAAATTGATCAGTCCTTCCAGATTCACCGTAGTTATGGAAGCATGCTTGAAGGCGAGGCTGATGAACTTAAGAGGGTATTTTTGGAAGGAAATCCTTACCTCCTGGCAATTACCATGGTTGTTTCTCTTCTTCATTCAGTATTTGACTTTTTGGCTTTCAAGAATGACATCCAATTTTGGAACAAAAATAAGTCTATGGAAGGACTCTCTGCAAAGACTGTTGTTGTGAGCTTTATTTGTCAGCTTATCATTTTCCTTTATCTGCTTGACAATGACACCTCTTGGATGATTCTTGCAAGCTCTGGAATTGGTTGTGTTATTGAGTTCTGGAAAATTGGAAAAGCTATGCGCATAGAGATTGATAGGACAGGAAGGATACCTATGTTGAGACTCCGAGATCGAGAGTCATATGTACGGAATAAGACAAAGGAATATGATGATATTGCAATGAAGTATTTATTCTATGTTCTATTTCTCCTTGTTGCTGGCTTCTCTGTTTACTCACTAATGTATGAGCGTCACAAGAGCTGGTATTCTTGGATTCTGTCTTCACTCACAAGTTGTGTTTACATGTTTGGCTTTATTATGATGTGCCCTCAGTTGTTCATCAACTACAAACTCAAGTCTGTTGCTCATCTACCTTGGAGGCAGATGACTTACAAGTTTCTCAACACCATTATTGATGATCTTTTTGCCTTTGTCATTAAAATGCCAACACTACATCGGCTTTCTGTCTTCCGTGATGATCTTATCTTCCTTATATATTTATACCAGAGGTGGATTTATCCAGTGGACAAGAAACGTGTAAACGAATTTGGTTTTGGAGGTGAGGATGAACAACAGCTTGTGGATTCTGCAGAGACTGATGCTGCAAAGGAAGAAGAGAAGAAAACTAAATGATTTGGTTTTAAACTGTTTTGAGAGAATTTTACGGTAGATACTAATTATTGTAAAATTCAATGGGCATCAATTTGTTTTTTCTCCCTCTTTGGATATATATTTGCTATTAGAATTTTGTTTAAACAAATATTTGGCCTTACCTTCTAGAAGTTTTACTAAGACTGAAGGGTATCTGACTACTAGGACCTTTATGGCNGACTGTGATGGTTATACGGCTTATTAGTTTCATTATTTTGTGTATTAGAGTGCCTTCTCCGTAGTTTTCTTTATTATAAAATATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00282	76945	84525	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000282s00015759.1	PF05602.7	CLPTM1	28	469	1.20E-148
Glyur000282s00015759.2	PF05602.7	CLPTM1	28	460	5.90E-153

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	61.975
SRR1783600	control	62.210
SRR1783602	moderate drought stress	57.971
SRR1811619	moderate drought stress	57.977

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	77.414
DRR006520	Root Summer glycyrrhizin high producing strain	77.436
DRR006521	Root Winter glycyrrhizin high producing strain	245.288
DRR006522	Root Winter glycyrrhizin high producing strain	238.783
DRR006523	Root Summer glycyrrhizin low producing strain	66.564
DRR006524	Root Summer glycyrrhizin low producing strain	66.376
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.728
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.121

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	133.191
SRR2868004	Drought Stress (root)	123.019
SRR2967015	Control (root)	118.402

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.032
SRR9715740	Leaf	56.834
SRR9715741	Leaf	57.792
SRR9715739	Root	61.125
SRR9715742	Root	70.702
SRR9715743	Root	72.569

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	67.271
SRR8749028	MeJA induced 9h	71.127
SRR8749029	MeJA induced 9h	42.295
SRR8749030	Uninduced	49.824
SRR8749031	Uninduced	32.319
SRR8749032	Uninduced	29.314

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	87.239
SRR8400027	Control - Root	88.522