Gene detail information of Glyur000282s00015757 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23570.1 | 1.00E-156 | XS domain-containing protein / XS zinc finger domain-containing protein-related |
| NR | XP_004503025.1 | 0 | PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|A5YVF1|SGS3_SOLLC | 0 | Protein SUPPRESSOR OF GENE SILENCING 3 |
| trEMBL | tr|D3GBV0|D3GBV0_LOTJA | 0 | Reduced leaflet 1 {ECO:0000313|EMBL:ACN79519.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00282 | 65468 | 70240 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000282s00015757.1 | PF03470.9 | zf-XS | 247 | 285 | 1.80E-09 |
| Glyur000282s00015757.1 | PF03468.9 | XS | 318 | 432 | 8.40E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 42.092 |
| SRR1783600 | control | 42.160 |
| SRR1783602 | moderate drought stress | 53.414 |
| SRR1811619 | moderate drought stress | 52.990 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 76.399 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 75.538 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.317 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.583 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 94.491 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 93.244 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.760 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 76.437 |
| SRR2868004 | Drought Stress (root) | 65.667 |
| SRR2967015 | Control (root) | 72.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.897 |
| SRR9715740 | Leaf | 16.812 |
| SRR9715741 | Leaf | 21.602 |
| SRR9715739 | Root | 3.115 |
| SRR9715742 | Root | 20.632 |
| SRR9715743 | Root | 17.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 101.047 |
| SRR8749028 | MeJA induced 9h | 78.310 |
| SRR8749029 | MeJA induced 9h | 53.464 |
| SRR8749030 | Uninduced | 15.896 |
| SRR8749031 | Uninduced | 4.486 |
| SRR8749032 | Uninduced | 7.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 62.545 |
| SRR8400027 | Control - Root | 66.095 |