Gene detail

Gene detail information of Glyur000282s00015753

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G51070.1	Clp ATPase
NR	XP_006578745.1	PREDICTED: chaperone protein ClpD, chloroplastic-like [Glycine max]
COG	NP_487039.1	endopeptidase Clp ATP-binding chain [Nostoc sp. PCC 7120]
Swissprot	tr\|P42762\|CLPD_ARATH	Chaperone protein ClpD, chloroplastic (Precursor)
trEMBL	tr\|I1JXT1\|I1JXT1_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G38050.1}

Sequence

Transcript Sequence

>Glyur000282s00015753.1
CTTCCTTCCCCTTTCTTCTTTCTTCTTCCTTCCTTCCCCCTCCTCCCTGAAAGCGAAACTTTAAAAATAAAAAAGTTGCCTTTTCTTATTCGTTGATGAAACCCCGTGATCTTCGCCATAGTACTACTAACAATTTCTTGCTCAACAAAGAAACACAACCTCTCTGAAACCGGCGTTAATTTTTGGCGGCAAAATACNCAACCCAACCCAACCCAAACCAAACCAAACCAAGCCAAACCACATCATCCTCACCTCAAAGATGCAAGTTTCGTCATCATCGATGAACTCATGGTTTGGATTTGGAACANTTGCTTCCACTCGGTGCCAACAAGTTCGCCCCTTCCCATCGGAACCGTGTTCTTCTTCTTCTACTGCTACCTCCGTTTTATTCTCACGTGCCGGGAACAAGAACAACAAGATTAACAGCNGCAATTCTCTCTCGTTTCTTGCGTCTCAAAGAAAAGGATGTTCTCTCACCTCGCCGGCGGCGCCAACCACTGGCGGAAGAAGAGCGAGGAGGAGGAGAGTGTTGACCGTGCACGCGTTGTTCGAGCGGTTCACGGAGAGAGCAATAAAGGCGATAGTGTTTTCACAGAGGGAAGCGAAGGCTCTTGGGAGTGAAATGGTTTACACGCAGCATCTCTTGCTGGGTCTCATAGCGGAAGAGGATCGTTCTCCTCCGGATGGTGGTTTCCTTGCTTCTGGTGTCACCATTGAGAAGGCACGCGATGCTGTTCGCAACATTTGGCATCGAAACCAAAAGGCCAGTTCTTCTTCTGTTTCTGGCTCCAATATCCCTTTTTCCATTGTCGCTAAGCGAGTGTTTGAGTCAGCTGTTGAGTATTCAAAATCTCTGGGGCATAAATTCGTTGCCCCTGAACACATTGTCGTTGCTTTAGTCAAAGAAGATGATGGAACTGCTAATCGGGTCCTTTACAGACTGGGGACAAATACAAATCAGTTGGCNTCTGTGGCATTCTCCAGACTACAAAAGGAGCTTGCTAAAGATGGTAGAGAACCAAATATGCACAACAAATCTATTTCAAGAAAAGGTTCTGATGCAGGATCCACCGCCACAGCAACAGAGACTAGTGCTCTATCACAATTCTGTGTGGATCTCACTGCCCGTGCAAGTGAAGGACGAATTGATCCAGTTATTGGCCGAGAAGTTGAAGTTCATAGAATTATTCAAATACTATGCCGAAAGACGAAAAGCAATCCCATCCTTCTTGGTGAAGCTGGCGTTGGAAAAACAGCTATTGCAGAGGGACTGGCANTTCGTATTGCTCGGGCAGATGTTGCTCCTTTTTTATTGACAAAACGTGTCATGTCCCTGGATGTAGCACTATTATTGGCAGGGGCAAAAGAGAGGGGAGAGCTAGAGGAACGTGTTACAAAATTAATAAAAGAGATAATAGACTCAGGTGACGTCATTCTTTTCATTGATGAAGTTCATACACTTGTTCAATCAGGCACTGTTGGGAGGGGAAATAACGGTTCTGGCCTAAACATTTCTAATTTACTCAAACCTGCACTTGGAAGGGGTCAGTTTCAGTGTATTGCGTCTACCACCATGGATGAATACAGGCTTCATTTTGAAAAAGACAAGGCTTTGGCAAGACGGTTTCAACCTGTTTGGGTTGATGAGCCGAGTGAGGATGATGCAGTTAAGATACTTGTGGGTCTACGTGAGAAGTATGAGGCATACCACAAATGCAGATATACAGAAGATGCCATAATGGCTGCGGTTCATTTGTCAGCAAGATACATAGTTGATAGGTATCTACCTGACAAAGCTATTGACCTCATAGATGAAGCAGGAAGTAGAGCTCGTATTGAAGCCTTTAAGATGAAAAAAAAGCAAGAAACTTGCATACTTTGTAGGAGCCCAGCTGATTATTGGCTAGAAATTAGAACTGTTCAATCCATGCATGAAATGGAGAGCAAGCTTAAATACTATGGCGCGTCTAGCATTGATGATACCAATGAACTCATACTGGACTCATATTTAGCTTCTGCACCGAATGATGCTGAACCTATAGCAGTTGGGCCAGATGATATAGCAGCAGTTGCTTCCCTCTGGTCAGGAATCCCTGTTCAGCAGCTCACTGCTGATGAAAGAGTTCGTCTGTTAGATCTTGATAATCAACTTCGGNAACGCGTGATTGGACAAGAGGAGGCTGTTTCTGCCATTTCTAGAGCTGTGAAGAGATCCCGGGTTGGCTTCAAGGATCCCAGTAGACCCATAGCTACAATGCTATTCTGTGGCCCAACTGGGGTTGGGAAAACTGAACTTGCAAAATCTCTGGCAGCATGTTACTTCGGATCGGAAGCAGCCATGGTAAGATTAGACATGAGTGAATATATGGAACGGCATACAGTGAGCAAATTGATAGGTTCTCCCCCAGGTTATGTTGGTTATGGAGAGGGGGGCATTTTAACCGAAGCTATTAGAAGAAAACCATTCACACTGTTATTGTTTGATGAAATAGAGAAAGCTCATCCAGATATATTCAACATTCTTCTTCAATTGATGGAAGATGGTCATCTTACTGATTCTCAGGGTCGAAGAGTTTCATTCAAAAATGCATTGGTGGTGATGACTTCGAATGTGGGGTCTAGTGCCATTGCTAAGGGTCAACACAACTCCATAGGTTTCATGATTCCTGATGACAAATCAACATCATATAATGGCTTGAAATCAATGGTAATTGAAGAACTGAGATCATATTTTCGTCCAGAACTGCTCAACAGGATAGATGAAGTGGTAGTGTTTCAACCCCTTGAGAAGTCACAGTTGCTGGAGATATTGGATGTGCTGCTGCAAGACATAAAGAAAAGGGTCTTGTCCCTAGAAGTTGATTTAGAAGTGTCTGAATCAGTCAAGGACCTTGTGTGCAAGCAAGGATATAACCCAACATATGGTGCTCGCCCTCTCAGGAGGGCCATAACCTCATTGATTGAAGATCCATTGAGTGAAGCATTCCTTTCTGGAAAGTGCAACAAAGGTGACACTGTCCTNATTGATTTGGATGCCAATGGTAACCCCTTTGTTACAAATCAGCTTGATCAGGTTGTCAACTTATCTGACACAAGTNATCCCCTGTAATTAGCCATTGTATAAAAGTAGCATTGGTAGGTATACACACACATATACTGAAAAAATGTTTTTGGCTCCTCTTTGTTAGCTTAGTATTTGATTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00282	33584	38881	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0019538 protein metabolic process

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000282s00015753.1	PF02861.15	Clp_N	111	161	1.60E-06
Glyur000282s00015753.1	PF02861.15	Clp_N	192	237	1.00E-09
Glyur000282s00015753.1	PF00004.24	AAA	322	430	4.80E-09
Glyur000282s00015753.1	PF07724.9	AAA_2	661	836	3.20E-50
Glyur000282s00015753.1	PF10431.4	ClpB_D2-small	842	921	1.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.812
SRR1783600	control	2.739
SRR1783602	moderate drought stress	2.539
SRR1811619	moderate drought stress	2.587

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.489
DRR006520	Root Summer glycyrrhizin high producing strain	5.372
DRR006521	Root Winter glycyrrhizin high producing strain	5.920
DRR006522	Root Winter glycyrrhizin high producing strain	5.886
DRR006523	Root Summer glycyrrhizin low producing strain	21.125
DRR006524	Root Summer glycyrrhizin low producing strain	21.022
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.840
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.784

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.756
SRR2868004	Drought Stress (root)	12.459
SRR2967015	Control (root)	11.871

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.372
SRR9715740	Leaf	4.174
SRR9715741	Leaf	12.490
SRR9715739	Root	1.538
SRR9715742	Root	6.300
SRR9715743	Root	4.505

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.017
SRR8749028	MeJA induced 9h	18.119
SRR8749029	MeJA induced 9h	17.586
SRR8749030	Uninduced	17.428
SRR8749031	Uninduced	31.335
SRR8749032	Uninduced	32.421

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.170
SRR8400027	Control - Root	17.003