Gene detail

Gene detail information of Glyur000282s00015746

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G07350.2	4.00E-125	TUDOR-SN protein 1
NR	XP_003526911.1	0	PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max]
trEMBL	tr\|I1KBV2\|I1KBV2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G17050.5}

Sequence

Transcript Sequence

>Glyur000282s00015746.1
ATCTCTCTTCTCTTCTTCCCGNGTTCTTCCCTCCGCCGGAAAGTGAAACACTGGAACTCTTGTTCTGCGGTTGTGCTCGTGCTACCGCTTCGGATCTATCTCTCNTAACTAATAAAAACCTAAAAATCTCATAGAATTCACCGTTTTCAGTTTTGACATTCGGTTTGGTTCCGCTCTTATCCGAAGTGAGAACCATTACAAGCAGATCGCGCGGTAACTGTTGAAAAATGGCATCGGCAGCGAGTGCGACCACGGGATGGTACAAGGGAAGGGTGAAAGCTGTTCCTTCAGGGGATTGTTTGGTNATCGTGGCCATTACTAGCTCCAAGCCTGGTCCCCTGCCTGAAAAATCCATCACTTTGTCTTCTCTAATTGCTCCTAGACTGGCAAGGAGAGGCGGTGTGGATGAGCCATTTGCATGGGAAAGTAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGGAGGTGACCTTCAGAGTTGATTACAATGTGCCCAACATAAATCGAGATTTTGGAACTGTTTTTCTCGGTGACAAGAATGTCGCAATGCTGGTTGTTTCACAAGGATGGGCAAAGGTCAGAGAGCAGGGGAACCAGAAAGGGGAAGTGAGTCCGTACTTGTCGGAATTGTTACGGTTAGAAGAACAAGCTAAACAAGAAGGCTTTGGGCGNTGGAGCAAGATTCCAGGTGCTGCCGAGGCATCCATCAGAAATCTACCACCTTCTGCCCTTGGTGACCCTAGTAACTTTGATGCTATGGGTTTTTTAGCTGCAAACAAGGGATTGCCCATGGAGGCAATTGTTGAGCAGGTTCGGGACGGCAGCACTATCCGAATCTATTTGCTCCCGGAGTTTCAGTTTGTCCAAGTTTTCGTTGCTGGAATACAGGCCCCACAAATGGGAAGGAGAACTGCACCTGAAAGTGTCGTTGAATCAGAGTCGACAGCTGATGACACTAATGGAGATGTTCCTGGGGAACCTCGAGCCCCACTTACATCTGCCCAAAGACTTGCTGTTTCAACATCTGCTGAAACTGCAGCAGCTGATCCTTTTGCACCTGACGCTAAATTTTTCACTGAGATGCGTGTATTGAATCGAGATGTNCGGATTGTCCTGGAAGGTGTGGATAAGTTCAGCAATTTGATTGGGTCAGTGTATTATCCTGATGGTGAATCAGCAAAGGACCTGGCACTAGAGCTTGTGGAAAACGTATGTGACTCACCTTTATAGAGTGATATATATCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00282	474	3061	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0035194 posttranscriptional gene silencing by RNA

molecular_function
GO:0003712 transcription cofactor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000282s00015746.1	PF00565.12	SNase	43	151	4.10E-11
Glyur000282s00015746.1	PF00565.12	SNase	269	327	0.00025

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.148
SRR1783600	control	26.539
SRR1783602	moderate drought stress	16.921
SRR1811619	moderate drought stress	17.243

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.752
DRR006520	Root Summer glycyrrhizin high producing strain	25.965
DRR006521	Root Winter glycyrrhizin high producing strain	22.928
DRR006522	Root Winter glycyrrhizin high producing strain	21.533
DRR006523	Root Summer glycyrrhizin low producing strain	10.084
DRR006524	Root Summer glycyrrhizin low producing strain	8.478
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.724
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.903

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.004
SRR2868004	Drought Stress (root)	51.821
SRR2967015	Control (root)	52.387

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.844
SRR9715740	Leaf	11.930
SRR9715741	Leaf	19.371
SRR9715739	Root	10.782
SRR9715742	Root	57.659
SRR9715743	Root	48.428

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.752
SRR8749028	MeJA induced 9h	31.211
SRR8749029	MeJA induced 9h	4.376
SRR8749030	Uninduced	5.438
SRR8749031	Uninduced	4.092
SRR8749032	Uninduced	1.827

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	58.206
SRR8400027	Control - Root	63.323