Gene detail information of Glyur000281s00018257 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63470.1 | 9.00E-71 | serine carboxypeptidase-like 40 |
| NR | KHN12757.1 | 7.63E-144 | Serine carboxypeptidase II-3 [Glycine soja] |
| COG | YP_002430787.1 | 1.00E-14 | peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01] |
| Swissprot | tr|P52711|CBP23_HORVU | 6.00E-90 | Serine carboxypeptidase II-3 chain B (Precursor) |
| trEMBL | tr|I1MXR6|I1MXR6_SOYBN | 3.00E-143 | Carboxypeptidase {ECO:0000256|RuleBase:RU361156} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00281 | 210480 | 216462 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000281s00018257.1 | PF00450.17 | Peptidase_S10 | 4 | 257 | 2.30E-80 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.686 |
| SRR1783600 | control | 23.274 |
| SRR1783602 | moderate drought stress | 6.009 |
| SRR1811619 | moderate drought stress | 6.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.901 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.153 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.364 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.185 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.302 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.093 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.525 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.587 |
| SRR2868004 | Drought Stress (root) | 8.457 |
| SRR2967015 | Control (root) | 7.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.054 |
| SRR9715740 | Leaf | 0.138 |
| SRR9715741 | Leaf | 1.186 |
| SRR9715739 | Root | 0.262 |
| SRR9715742 | Root | 9.227 |
| SRR9715743 | Root | 1.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.789 |
| SRR8749028 | MeJA induced 9h | 0.802 |
| SRR8749029 | MeJA induced 9h | 0.805 |
| SRR8749030 | Uninduced | 1.753 |
| SRR8749031 | Uninduced | 11.179 |
| SRR8749032 | Uninduced | 5.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.331 |
| SRR8400027 | Control - Root | 10.357 |