Gene detail information of Glyur000281s00018255 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42690.2 | 8.00E-92 | Protein of unknown function, DUF547 |
| NR | XP_006601299.1 | 0 | PREDICTED: uncharacterized protein LOC100801978 isoform X1 [Glycine max] |
| trEMBL | tr|K7MNR5|K7MNR5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G36350.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00281 | 194217 | 198825 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000281s00018255.1 | PF14389.1 | Lzipper-MIP1 | 14 | 98 | 2.90E-25 |
| Glyur000281s00018255.1 | PF04784.9 | DUF547 | 305 | 404 | 4.90E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.046 |
| SRR1783600 | control | 10.791 |
| SRR1783602 | moderate drought stress | 17.680 |
| SRR1811619 | moderate drought stress | 17.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.663 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.245 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.594 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.457 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.069 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.266 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.348 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.490 |
| SRR2868004 | Drought Stress (root) | 10.002 |
| SRR2967015 | Control (root) | 8.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.207 |
| SRR9715740 | Leaf | 8.131 |
| SRR9715741 | Leaf | 3.637 |
| SRR9715739 | Root | 1.105 |
| SRR9715742 | Root | 5.330 |
| SRR9715743 | Root | 4.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.368 |
| SRR8749028 | MeJA induced 9h | 2.216 |
| SRR8749029 | MeJA induced 9h | 1.083 |
| SRR8749030 | Uninduced | 4.866 |
| SRR8749031 | Uninduced | 0.156 |
| SRR8749032 | Uninduced | 0.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.331 |
| SRR8400027 | Control - Root | 10.670 |