Gene detail

Gene detail information of Glyur000281s00018250

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G61650.1	gamma-tubulin
NR	XP_004494797.1	PREDICTED: tubulin gamma-1 chain-like isoform X1 [Cicer arietinum]
Swissprot	tr\|P38557\|TBG1_ARATH	Tubulin gamma-1 chain
trEMBL	tr\|G7L416\|G7L416_MEDTR	Tubulin gamma chain {ECO:0000256\|RuleBase:RU003506}

Sequence

Transcript Sequence

>Glyur000281s00018250.1
GTTTCTTTTTCTCTCATCTGAAGCACATCCTTTTCCTCTCATAATCAGTTCTACCTACAGTGTTTAGTCTTTTCTTTATATTTTGAGAAAGGAGGAACCAAAACCCTCACTGGTTTGGTTTCAGCGAGAAAGAAAGAAAGGAATGCCGAGGGAAATAATAACGCTTCAGGTAGGGCAATGCGGGAACCAGATCGGCATGGAGTTCTGGAAACAGCTCTGCCTCGAGCATGGCATCAGCAAAGACGGCATCCTCGAAGACTTTGCAACTCAGGGAGGTGATAGGAAAGACGTGTTCTTCTATCAAGCTGATGACCAGCATTATATACCTAGGGCTCTATTGATTGACTTGGAGCCTAGAGTCATTAACGGAATCCAAAACAGTGACTACCGAAATCTCTACAATCATGAGAACATCTTCCTCTCTGACCATGGTGGTGGTGCAGGCAACAATTGGGCCAGTGGATACCATCAGGGAAAGAATGTTGAGGAAGACATAATGGACATGATTGACAGGGAAGCAGATGGTAGCGACAGTCTTGAGGGTTTTGTTCTATGTCATTCAATTGCTGGAGGAACAGGCTCAGGGCAATGCGGGAACCAGATCGGCATGGAGTTCTGGAAACAGCTCTGCCTCGAGCATGGCATCAGCAAAGACGGCATCCTCGAAGACTTTGCAACTCAGGGAGGTGATAGGAAAGACGTGTTCTTCTATCAAGCTGATGACCAGCATTATATNCCNAGGGCTCTNNTNATTGACTTGGAGCCTAGAGTCATTAACGGNATCCAAAACAGTGACTACCGAAATCTCTACAATCATGAGAACATCTTCCTCTCTGACCATGGTGGTGGTGCAGGCAACAATTGGGCCAGTGGATACCATCAGGGAAAGAATGTTGAGGAAGACATAATGGACATGATTGACAGGGAAGCAGATGGTAGCGACAGTCTTGAGGGTTTTGTTCTATGTCATTCAATTGCTGGAGGAACAGGCTCAGGTATGGGCTCATACTTGTTGGAGACATTGAATGACCGNTACAGCAAAAAACTGGTTCAGACGTATAGTGTGTTTCCTAACCAAATGGAGACAAGTGATGTGGTGGTCCAACCATACAATTCACTTTTGACACTCAAGCGACTGACTCTTAATGCAGATTGTGTTGTAGTTCTTGACAATACTGCTCTAAATAGAATTGCTGTCGAACGACTTCATTTATCAAATCCAACATTTGCTCAAACAAATTCCTTAGTTTCTACTGTGATGTCTGCCAGCACAACCACGCTTCGCTATCCAGGATACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTTTGATTCCAACACCAAGATGCCATTTTCTAATGACAGGATATACGCCTTTGACAGTGGAACGTCAGGCTAATTTAATTCGGAAGACCACTGTGCTTGATGTTATGAGAAGACTTCTTCAGGCAAAGAATATTATGGTCTCTTCTTATGCACGGACCAAAGATGCTAGCCAAGCGAAATATATATCAATTCTGAATATTATCCAAGGAGAGGTTGACCCAACTCAGGTTCATGAAAGTTTGCAAAGGATACGTGAAAGAAAGCTAGTTAACTTTATTGAGTGGGGCCCTGCAAGTATTCAGGTTGCTCTATCCAGGAAGTCACCATATATTCAAACTGCACACAGGGTCAGCGGCCTTATGCTGGCTAGCCATACTAGCATCCGTCACCTTTTCAGTAAATGTTTGAGCCAGTATGAGAAGTTGAGAAGGAAACAAGCCTTTTTAGACAACTACCGGAAGTTCCCAATGTTTGCTGATAATGACCTCTCAGAATTTGACGAATCAAGGGACATAATTGAGAGTTTGGTTGATGAATATAAAGCCTGTGAATCCCCAGATTATATCAAATGGGGAATGGAGGATCCAAATAATATGCTAACAGGAGAAGGAAATGCTACAGGATCTCTGGATCCAAAATCAGTAGTGTGAAGAAACCAAGGCATTCGATGGTTTGCGGTGTGATAATTTTGGTTTGCGTTGTTTGTTTATCCTTTGGACATCCGTACAAGGGAGATCGAGTTCAGAATCTCACTGTATTGACTCGTTTTCAGCATTATATATGGTTAGTTGGTTGGTCACATACATGTAGATAGAATTTGGGACTCTAGTTTTATTCTCCAGATCTNAGGTGTTTGTTGGGTGATCTTGCTGTTGGTTCATTATGAATCTTACAAAATTTAAACTGCTGTGTTGCATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00281	149259	158209	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007017 microtubule-based process

GO:0007020 microtubule nucleation

GO:0031122 cytoplasmic microtubule organization

GO:0051258 protein polymerization

cellular_component

GO:0000930 gamma-tubulin complex

GO:0005874 microtubule

GO:0043234 protein complex

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000281s00018250.1	PF00091.20	Tubulin	148	363	2.60E-70
Glyur000281s00018250.1	PF03953.12	Tubulin_C	401	531	4.30E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.831
SRR1783600	control	3.752
SRR1783602	moderate drought stress	2.110
SRR1811619	moderate drought stress	2.029

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.427
DRR006520	Root Summer glycyrrhizin high producing strain	7.128
DRR006521	Root Winter glycyrrhizin high producing strain	2.574
DRR006522	Root Winter glycyrrhizin high producing strain	2.425
DRR006523	Root Summer glycyrrhizin low producing strain	5.376
DRR006524	Root Summer glycyrrhizin low producing strain	5.445
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.690
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.690

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.876
SRR2868004	Drought Stress (root)	5.561
SRR2967015	Control (root)	8.053

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.302
SRR9715740	Leaf	0.542
SRR9715741	Leaf	0.634
SRR9715739	Root	0.897
SRR9715742	Root	1.792
SRR9715743	Root	1.442

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.938
SRR8749028	MeJA induced 9h	8.112
SRR8749029	MeJA induced 9h	13.034
SRR8749030	Uninduced	3.474
SRR8749031	Uninduced	2.607
SRR8749032	Uninduced	3.016

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.638
SRR8400027	Control - Root	10.036