Gene detail

Gene detail information of Glyur000281s00018245

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26510.1	0	Xanthine/uracil permease family protein
NR	XP_007160814.1	0	hypothetical protein PHAVU_001G018700g [Phaseolus vulgaris]
COG	YP_007285782.1	7.00E-79	xanthine/uracil permease [Halovivax ruber XH-70]
Swissprot	tr\|Q8GZD4\|NAT3_ARATH	0	Nucleobase-ascorbate transporter 3
trEMBL	tr\|V7CTV3\|V7CTV3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW32808.1}

Sequence

Transcript Sequence

>Glyur000281s00018245.1
GGAAAACAACACAACTCTTTTCATATTAAGCGTTTCTTTTTCTTTTTTTTAAGACTTTGCTGATATGCTCAACTTTGTTTATTGTATAATAATTCATCTTTAAAATTAGCCATTCCATTTAATTTCATTCAAAACTTTATAAGAAACACAAACAAACTCTCTGATCTCTTTCTCTATCTATCTCTGAGAATTAGACAGGATTTGGATTTTGGAAGAAAAATGGGTGAAGAGAACCACCAAGCACCGCCACCAGTTCAGGCACCGCCACCAGGACCACCACCGCAGAATCTCGCACTTTCAAAGGGACCCACTTGGACTCCAGCTGAACAACTCCTGCAACTTCACTATTGCATCCACTCCAACCCTTCATGGCCGGAAGCACTTCTTCTTGGTTTTCAGCACTACATTGTGATGCTTGGAACAACGGTTCTGATTGCATCCACACTGGTACCTCAAATGGGTGGGAGTCATCGTGACAAGGCTCGTGTGATTCAGACATTGTTGTTTATGTCTGGTGTGAACACACTGCTTCAGACTTGGTTTGGTTCAAGGCTTCCAACTGTGATGGGNGCATCCTTTGCTTTCTTCCTTCCAGTGATGTCCATCATAAATGATTATACTGAGAGAGATTTCTCATCTGAGCGTGAGAGGTTTACCTACACAATAAGAACAATTCAAGGATCCCTAATTGTTTCTTCTTTCATCAATATCTTCCTTGGATATAGTAAGGCATGGGGAAATTTAACAAGGTTGTTTAGTCCCATCATCATTGTACCTGTGGTATGCGTGGTGGGTCTTGGCCTGTTTATGAGGGGCTTTCCATTGGTTGCAGAATGCGTGCAAATTGGACTGCCTATGCTAATTCTGCTAGTCATAACACAGCAGTATTTGAAGCGCCTTCATCCTCGTGCTCATCATGTACTTGAGAGGTTTGCTTTACTTCTCTGCATTGCCGTCGTTTGGGCTTTTGCTGCTATCCTTACTGTTGCCGGTGCTTACAATAATGCCAAAGAAAAGACCCAAACGAGTTGTCGCACAGATCGNTCGTACCTTATGTCTACTGCTCCTTGGATCAAAGTTCCATACCCATTTCAGTGGGGTACCCCCATATTTAAAGCTAGTCATGTCTTTGGGATGATGGGGGCAGCACTTGTCTCTTCTGCAGAGTCAACTGGTACTTTTTTCGCTGCAGCCAGGCTTTCTGGTGCAACATCCCCTCCTTCACATGTGCTCAGTCGAAGCATCGGGCTGCAGGGCATTAGCATGCTGCTTGAAGGCATTTTTGGTTCTGTTGTTGGTACAACAGCATCCGTTGAAAATGTTGGTCTACTTGGTCTAACGCATATAGGGAGCAGAAGAGTAGTGCAGATATCTTGTGGTTTCATGATCTTCTTCTCCATTTTTGGGAAATTTGGAGCCTTTTTCGCATCAATTCCGCTACCAATATTTGCGGCCATAAANTGTGTTTTATTCGGTATTGTAGCTGCTGTTGGGATTTCATTCATACAATTTGCAAACAACAATTCCATAAGAAACATCTATGTTTTGGGCCTATCCTTGTTTCTTGGGATTTCAATTCCTCAATATTTTGTTATGAACACTGCACCTGATGGTCATGGTCCAGTTAGAACAAATGGNGGATGGTTCAATGACATTTTGAACACCATATTCTCTTCTCCCCCAACTGTGGCTATAATCGTTGGGACAGTTCTTGACAACACACTTGATGCCAAACACACAGCTGTTGAGAGAGGAATGCCATGGTGGGTTCCATTCCAGAAAAGGAATGGAGATGTTAGAAATGATGAATTTTACCGCTTTCCCCTCAGGTTAACTGAATATATTCCTACCAGATTTCTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00281	100731	105515	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000281s00018245.1	PF00860.15	Xan_ur_permease	53	457	6.70E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	80.605
SRR1783600	control	80.630
SRR1783602	moderate drought stress	58.483
SRR1811619	moderate drought stress	58.119

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	64.072
DRR006520	Root Summer glycyrrhizin high producing strain	63.564
DRR006521	Root Winter glycyrrhizin high producing strain	57.840
DRR006522	Root Winter glycyrrhizin high producing strain	56.436
DRR006523	Root Summer glycyrrhizin low producing strain	68.033
DRR006524	Root Summer glycyrrhizin low producing strain	67.423
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.427
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.680

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.089
SRR2868004	Drought Stress (root)	30.939
SRR2967015	Control (root)	41.074

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.649
SRR9715740	Leaf	22.768
SRR9715741	Leaf	34.423
SRR9715739	Root	43.084
SRR9715742	Root	49.045
SRR9715743	Root	48.430

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	223.355
SRR8749028	MeJA induced 9h	160.531
SRR8749029	MeJA induced 9h	236.366
SRR8749030	Uninduced	101.258
SRR8749031	Uninduced	107.820
SRR8749032	Uninduced	125.616

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.369
SRR8400027	Control - Root	36.408