Gene detail information of Glyur000280s00015711 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31812.1 | 9.00E-33 | acyl-CoA-binding protein 6 |
| NR | XP_006432817.1 | 1.60E-53 | hypothetical protein CICLE_v10002973mg [Citrus clementina] |
| COG | YP_005442970.1 | 1.00E-18 | putative acyl-CoA-binding protein [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| Swissprot | tr|O04066|ACBP_RICCO | 9.00E-54 | Acyl-CoA-binding protein |
| trEMBL | tr|V4SZ03|V4SZ03_9ROSI | 6.00E-54 | Uncharacterized protein {ECO:0000313|EMBL:ESR46057.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00280 | 205433 | 207594 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000280s00015711.1 | PF00887.14 | ACBP | 3 | 85 | 5.60E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 56.528 |
| SRR1783600 | control | 54.446 |
| SRR1783602 | moderate drought stress | 49.533 |
| SRR1811619 | moderate drought stress | 46.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 217.270 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 215.118 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 164.824 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 161.552 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 296.313 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 292.612 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 175.001 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 173.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 441.006 |
| SRR2868004 | Drought Stress (root) | 369.030 |
| SRR2967015 | Control (root) | 329.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 201.127 |
| SRR9715740 | Leaf | 198.774 |
| SRR9715741 | Leaf | 215.413 |
| SRR9715739 | Root | 82.332 |
| SRR9715742 | Root | 91.974 |
| SRR9715743 | Root | 86.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 162.904 |
| SRR8749028 | MeJA induced 9h | 100.979 |
| SRR8749029 | MeJA induced 9h | 173.294 |
| SRR8749030 | Uninduced | 154.882 |
| SRR8749031 | Uninduced | 131.244 |
| SRR8749032 | Uninduced | 167.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 274.560 |
| SRR8400027 | Control - Root | 284.733 |