Gene detail

Gene detail information of Glyur000280s00015708

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G31830.1	0	Amino acid permease family protein
NR	XP_006573486.1	0	PREDICTED: probable polyamine transporter At1g31830-like isoform X2 [Glycine max]
COG	YP_004902067.1	5.00E-73	putative amino acid transporter [Kitasatospora setae KM-6054]
Swissprot	tr\|Q9C6S5\|PHSB_ARATH	0	Probable polyamine transporter At1g31830
trEMBL	tr\|I1J840\|I1J840_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G35320.1}

Sequence

Transcript Sequence

>Glyur000280s00015708.1
ATGGAGGATAAATTGAGGACTAAAGCTAACAATAAACACGCTTGTAATGCAATGGGGGAGTTCACCGGTGGTGATTATGTGACAATCGGTGAATTACCTACTTCCTCAAGAACAAGCAGCCACATGAAGAAAGTTTCAGTTCTCCCTCTTGTGTTTCTCATCTTCTATGAGGTCTCAGGGGGTCCTTTTGGTGTTGAGGATACTGTTCAAGCAGCTGGTCCTCTATTAGCCCTTCTTGGTTTCTTGGTTTTCCCATTCATATGGAGTGTCCCTGAGGCTTTAATCACTGCTGAGATGGGTACCATGTTCCCTGAAAACAGTGGCTATGTGGTTTGGGTTTCAGCTGCTTTGGGTCCTTATTGGGGGTTTCAACAAGGTTGGATGAAATGGCTTAGTGGGGTGATAGACAATGCTTTGTACCCAGTTCTATTCCTTGACTATTTGAAGTCAGGAATCCCAGCTTTAGGTGGTGGTTTACCTAGAGTTGTTGCAACTTGGGGTCTTACTATAGTTCTCACTTACTTGAACTACAGGGGTTTAACCATTGTGGGAGTTGTTGCTGTTTGTTTAGGTGTTTTCTCACTTTTACCTTTTGTGGTTATGGGGTTTATGTCAATTCCAGACTTGAAGCCTTCGAGATGGCTTGTGGCAGATCTAAAGGATGTAGACTGGAATTTGTATTTGAACACTCTATTTTGGAATCTCAATTATTGGGACTCCATAAGCACTCTTGCTGGTGAAGTTGAGAATCCAAAGAAGACTCTTCCCAAGGCTTTGTTCTATGCTTTGATCCTAGTTGTTCTGGGGTACTTCTTTCCTCTTTTAATCGGAACTGGTGCTGTTCCGGTCAAACGCGAGTTGTGGACGGATGGGTACTTCTCGGATATTGCCTTGATCATTGGAGGAGTGTGGTTGAGGTGGTGGCTTCAGGCTGCTGCTGCGATGTCGAATATGGGGATGTTCGTTGCTGAAATGAGCAGTGACTCTTTCCAGCTTTTAGGAATGGCTGAGAGGGGAATGTTGCCGGAGTTCTTCATCAAGAGGTCTCGCCACGGAACCCCTCTCATAGGAATTCTGTTCTCGGCCTCCGGTGTGATCNTGCTGTCATGGATGAGTTTTCAAGAAATCGTAGCAGCGGAAAACTTCTTGTACTGTATTGGGATGATTCTGGAGTTCATTGCATTCATATTGTTGAGGATCAAACACCCCAATGCATCTCGGCCTTACAAGATACCAGGTGGAACAGCTGGAGCAATTATCATGTGTATCCCTCCTACAATATTGATCTGTGTGGTATTGGCTTTCTCCTCCCTCAAAGTAACAATTATAAGCCTCATTGCTATGGCAATTGGCTTTGTGTTGCAGCCTTTACTCAAACTCATGGAAAAGAAGAGATGGATGAAGTTCTCCCATAGTTCTGAGCTTCCTGATTTTGAAGGTGAAGAAGGCACTCACTCTTTGGTGCGTTAAGTTTGTCCTGTTTCTATTTGTTTTGATAATAAGAATAATGTGGAGAGGTTTTACTCTTTTAATTAAGGTCCACCACTCTTGTATAAGCATGATAGTTGTTAGGTTTCTTTCAACTTCTCCAAACACAACCAACAACCAACACCCAAGGGGCAGCTTTGTATTCCATGCTTTTGGCACTTTAGCTGTTTATCTATGTTTGTAAGTTTGATGATAGATTAGATGGCAATTAGAAACGTGGAAGCTANTATTTAGAATGTATCTGGAAATAAATTTATTTGGTTCCCTGCATAAAATATGTTTATACTTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00280	192872	195165	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0003333 amino acid transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000280s00015708.1	PF13520.1	AA_permease_2	52	451	1.20E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	55.179
SRR1783600	control	55.281
SRR1783602	moderate drought stress	37.749
SRR1811619	moderate drought stress	38.306

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	63.906
DRR006520	Root Summer glycyrrhizin high producing strain	63.696
DRR006521	Root Winter glycyrrhizin high producing strain	21.340
DRR006522	Root Winter glycyrrhizin high producing strain	19.755
DRR006523	Root Summer glycyrrhizin low producing strain	42.915
DRR006524	Root Summer glycyrrhizin low producing strain	42.946
DRR006525	Leaf Summer glycyrrhizin high producing strain	43.002
DRR006526	Leaf Summer glycyrrhizin high producing strain	42.849

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	82.895
SRR2868004	Drought Stress (root)	88.682
SRR2967015	Control (root)	85.767

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	185.949
SRR9715740	Leaf	164.617
SRR9715741	Leaf	234.297
SRR9715739	Root	130.229
SRR9715742	Root	246.891
SRR9715743	Root	222.121

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.766
SRR8749028	MeJA induced 9h	23.965
SRR8749029	MeJA induced 9h	16.989
SRR8749030	Uninduced	24.511
SRR8749031	Uninduced	15.804
SRR8749032	Uninduced	17.553

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	108.911
SRR8400027	Control - Root	91.583