Gene detail

Gene detail information of Glyur000280s00015705

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G43040.1	tetratricopeptide repeat (TPR)-containing protein
NR	XP_004512392.1	PREDICTED: tetratricopeptide repeat protein 7B-like isoform X1 [Cicer arietinum]
trEMBL	tr\|I1L565\|I1L565_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G34720.1}

Sequence

Transcript Sequence

>Glyur000280s00015705.1
CCCCCTCCTTTTACCAGGCCGGTTTTCATTCCGAATCCCCTGCCTCAAACCAAATAATAAAACCTGACGAATCTAAAATCTTAAACAAAAAAAAAACACAATCTATATTTTTGTTGGCAATTCCAGTTGCAGATTCTCACTAGATTTTGCATTTGCGCTGTAATAGCGGTTGACCTCACACACCACCCACCACCCACCACTGTTCTGTTCCTTTCTATTTGTTTTGTTTTGTTTTCTTCTCTCAAACAAGACAAACTCATGGTAACTCGAATGCTAATTTGATCAAAACAAAACACAGGGTCCCCTAGATCTTGTTTGAGGTCACTGTTTCATCTCTCACCATTGCTCCCAGGCCACGTTGCTTTGGTAGTGGGGAGATGATTCATGGAGTCCAGTGAGCACGTTGGCGCGTCGGTTAGAGAGGTCCATGCAAATGGAAGCAGCATGTTTGCAACAGAAGTTGAGGTCAAGCTTGATGAAGGGAATATTCAAGAGGCAGAATCTGCATTGCGAGAAGGGTTGTCACTCAATTTTGAGGAAGCAAGAGCTCTTCTTGGGAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGTGCTCTCCGTGTCTTTGATGGGATTGATCTCCATGCTGCCATACAGAGATTGCAACCCTCCTTTTCTGAAAAAACATCAGTTAAAAAAGGTCGCACTCACACTGAATCACCTTCTTCAGTCTCTCAGCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACTGGGGAAATTTGCTGATGCTGCTAATGATTGTAAACGTATTCTTGATGCTGTTGAGAAGATATTTTATCAGGGTATACCTGATATTCAAGTGGACAATAAAGTGCAAGAGATGNTAAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGCCGGTTGCTATGCTGAGGNGATCTCAGCTTATAGGCGTGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAATCGTTTGTTGTATTTTTGCTGTACAGTGGTGTGGAGGCAAGTCCACCTAGTTTAGCAGTTCAGATTGATGGGTCTTATGTGCCTAAAAATAATCTCGAAGAGGCAATTCTGCTTTTAATGATTCTTATAAGAAAGGTCTGCCTTGGTAAGATAAAATGGGATCCTTCAGTTATGGAACACNTAACTTTTGCACTTTCTGTATGTAGCCAAACTTCTGCTTTAGCAAAGCAATTTGAAGACTTGATGCCTGGAATATACCATCGCATTGATCGTTGGAATTCTTTAGCTTTATGTCATAGTGGAGCCGGACAAAATGACACTGCTTTGAATCTGCTAAGGAAGTCCTTGCACAAACATGAACGACCGGATGACATTACATCATTATTATTAGCTGCTAAGATCTGCAGTGAGGATCCCCATCTTGCTGCCGAGGGAGTTGGCTATTCACAGAGGGCAATCAGTAATGCTCATGGTCTGAATGAGCATTTAAAAGGCGTTGCTCTTNGGATGTTGGGTCTTTGTTTGAGAAAGCAAGCTAAGATTGCTTCCTCTGACTTTGAGAGGTCTCACCTTCAATCCAAAGCTCTGGAATCATTGGAGGAGGCAATTAGATTGGAGNGGAACAATTCTGATCTGATTTTCGAGTTGGCTGTTCAATATGCAGAGCACCGGAATTTGACTGCTGCTCTGCGCTCCGCGAGGCATTTCTTTNATGAAACCGGTGGCTCTATAGGGAAAGCTTGGATATTGCTTGCTCTGATTTTGTCTGCGCAACAAAGGTTTATGGAAGCTGAAGTGGTGACAGATGCCGCTTTAGATCAGACTGCGAGATGGGAGCAGGGGACACTGCTTAGGCTAAAAGCAAAGCTGAAGATCTCCCAATCACGACCCATGGATGCTATTGAAACTTATCGCTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAATCCTTTGGGTCTTTCCGAATTAGTTCAAAGGTTGAGGATGATAAAGTTAATGAATTTGATATTTGGCATGGTCTGGCAAATTTATATGCCAGTCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGGAAAAGGCCAGGGAGTTGAAGGAGTACTCTGCAGCAATATTGCACACTAAAGGTGTTTTGTTTGAAGGGCGCAGGCAATATCAAGAAGCTCTCGATGCTACCATCAACGCTGTCCTACTTGAACCAAACTATGTTCCAAGCAAAATCTTGATGGGTGCTTTGATTCAGAAAATGGGTTCAAAGGCTTTGCCTGCTGCAAGAAGCATGCTATCTGATGTGCTTAGAATAGAACCCACAAACCGCATGGCTTGGCATTACTTGGGATTGGTTCACAAACATGATGGCCGAATTGGTGATGCTGCTGACTGCTTCCAAGCAGCTTCCATGCTTGAAGAATCCGATCCCATCGAAAGTTTCAGCACTATACTTTGACTAGATTCGATTTTGGGATAGTTAATTCTGCAGCCTTCATTGAGGTTTATACCATTATGTTTTTCAGTTAATACATAATCTGCGTTCAGTGGGACACAAGGGAAACAGTTTTTGGAAATATATTACTTTAAAAAAAAAATTGAATTATTGTCATCACAAACTAGGCTCAAAGAAAAAGATTTGAATACATTATTTAGGAAAACACAGTGAGAAAGGAATTGATGTTAAGCTGGTTGTACGATGGATGAGTTGTAAAGAAACTTTGATTGGCAGAGATTTTAACGTGGTTCAATAGCTGCTCAGTGCTCAGCCTTGTAAATGTATGTTCCTTAATCGAGCAGCATCATAGCTGCTCAGCCTTGTAAATGTATGTTCCTTAATCGAGCAGCATCATAGCTGCTCAGCCTTGTAAATGTATGTTCCTTAATCGAGCAGCATCTATGTAGAGAGAGTAGAGATTCACTTTTCTTCCTGTCTTTTCTTCCTGTATGTGCTTTAGTTTTTTTTTGGCTAGATGTACAAGGCTTAAAGGAAAAATGTATTTTGTAGTCACTCGAATTCAAATGCAGCCACTTGTGCTGTTATGTAAATTTCTGTAATTCTCTTGAACTTGAATGGTGTTACATGTGAATTTATGTAAGCCCTCCCAAAAATGTTTCCACTTTAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00280	180261	185485	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000280s00015705.1	PF13374.1	TPR_10	306	334	0.15
Glyur000280s00015705.1	PF07719.12	TPR_2	549	577	0.019
Glyur000280s00015705.1	PF07719.12	TPR_2	654	682	0.018
Glyur000280s00015705.2	PF13374.1	TPR_10	306	334	0.15
Glyur000280s00015705.2	PF07719.12	TPR_2	549	577	0.019
Glyur000280s00015705.2	PF07719.12	TPR_2	654	682	0.018

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.672
SRR1783600	control	1.611
SRR1783602	moderate drought stress	1.493
SRR1811619	moderate drought stress	1.627

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.434
DRR006520	Root Summer glycyrrhizin high producing strain	1.553
DRR006521	Root Winter glycyrrhizin high producing strain	2.530
DRR006522	Root Winter glycyrrhizin high producing strain	2.736
DRR006523	Root Summer glycyrrhizin low producing strain	1.983
DRR006524	Root Summer glycyrrhizin low producing strain	2.253
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.786
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.692

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.980
SRR2868004	Drought Stress (root)	7.314
SRR2967015	Control (root)	6.629

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.689
SRR9715740	Leaf	2.973
SRR9715741	Leaf	3.446
SRR9715739	Root	1.647
SRR9715742	Root	3.298
SRR9715743	Root	3.050

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.380
SRR8749028	MeJA induced 9h	3.557
SRR8749029	MeJA induced 9h	1.603
SRR8749030	Uninduced	0.885
SRR8749031	Uninduced	0.674
SRR8749032	Uninduced	0.582

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.950
SRR8400027	Control - Root	5.136