Gene detail information of Glyur000280s00015690 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G19100.1 | 1.00E-36 | Protein of unknown function (DUF3464) |
| NR | XP_003517076.1 | 5.99E-84 | PREDICTED: protein PAM68, chloroplastic [Glycine max] |
| Swissprot | tr|O49668|PAM68_ARATH | 4.00E-62 | Protein PAM68, chloroplastic (Precursor) |
| trEMBL | tr|G7K6V8|G7K6V8_MEDTR | 7.00E-82 | Transmembrane protein, putative {ECO:0000313|EMBL:AES95578.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00280 | 57642 | 58799 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000280s00015690.1 | PF11947.3 | DUF3464 | 68 | 201 | 1.00E-50 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.246 |
| SRR1783600 | control | 1.191 |
| SRR1783602 | moderate drought stress | 2.324 |
| SRR1811619 | moderate drought stress | 2.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.158 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.020 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.382 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.365 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.626 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.688 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.005 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.585 |
| SRR2868004 | Drought Stress (root) | 4.047 |
| SRR2967015 | Control (root) | 4.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.285 |
| SRR9715740 | Leaf | 27.672 |
| SRR9715741 | Leaf | 13.039 |
| SRR9715739 | Root | 0.497 |
| SRR9715742 | Root | 1.970 |
| SRR9715743 | Root | 2.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.571 |
| SRR8749028 | MeJA induced 9h | 3.206 |
| SRR8749029 | MeJA induced 9h | 2.460 |
| SRR8749030 | Uninduced | 0.843 |
| SRR8749031 | Uninduced | 0.171 |
| SRR8749032 | Uninduced | 0.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.608 |
| SRR8400027 | Control - Root | 1.433 |