Gene detail

Gene detail information of Glyur000280s00015685

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32120.1	2.00E-118
NR	XP_004512417.1	2.26E-176	PREDICTED: transmembrane protein 45A-like isoform X1 [Cicer arietinum]
trEMBL	tr\|G7K852\|G7K852_MEDTR	6.00E-173	Transmembrane 45B-like protein {ECO:0000313\|EMBL:AES95592.1}

Sequence

Transcript Sequence

>Glyur000280s00015685.1
GAAAAAATNAAATATGAGTGGAGAATGGTACGTTACGTAGCCGGTTTGCGGATTCAACTAGTAGTTAATTCACGGCAGCCTCCACGCTTTTCATNCCCCCCACTAAACCAAATCCATCGGTCTCAGATCCCACAAACACCCTCATCACACCCCCCTCGTTGCAGATTACCCTCCCAACCTTCTACCTTTTTTTCTCCCTTCAGTCTCTGCTTATTAAATTCAGTGATGGTGTTGTGATCTGGGAGAAGTACGTAGCTTTTTGAGAGAGAGAGAGAGAGAGAGACTCTGCTTTCTGCATCCAAACCAATCACTACTGTCGATTTAATTGGTAGGTCCATAAAGAGGATATCTTTCAGTGATCATCTATCTGCTTTGTACTGCTAAGAAATCATTCAGTGATCATCTATCTTTCGGCATCCGGAGAGTGGTAAAGATCAATCAAAATTCATAATTCATAACCATGGGATCTTTCAANGGTCATGCTTTGCCAGGGTCATTGTTTCTGGTAGTTGGGGTATGGCATATATGGGCCTCTGTGGTGAGATACGTGCNTAATCCTAAAACCTTTCAAGTCCGGGTCTGGAATCCTGTACCGGGGTTTNATGGGAGGCTCAAGCACCTGGAGCTCTATGTTATTGCAATTGGTGCTTTTATTGACATGTGCATCGAGTTCTTGTATTCAACCCACCTCAAGATATTTGTTGGTGGAGTCCTTAACCCTTCTCACATGAATGACTTTGAGCACTCAGGGATGCTTCTTATGTTTTTTATCTTCGGTGTTGTTGCCCTACTTAGTGTAAAGACCAGATTTCTTCCTTTGCCTCAAGGTGCTCTTTGTTTGATTGCTGGCGCTGCATTCTGTGCTGAGTATCTTCTATTCTACTTTCATTCAACAACACACAAGGGGCTTGAGGGCTATTACCACACTCTCCTGGTCTTCCTTATAGGGCTGTGTATTCTATCTTCAATTGCTGGAGCCCTTTTGCCAACCAACTTTCCAGTGGATTTATGTAATGGCATTGCCATGGCACTGCAAGGCATCTGGTTCTATCAGACCGCGTTCGTTCTTTATGGCCCCATGATGCCAGATGGTTGTAAGCTTAGGGATAACATGGTCATGTGTCATTCGAATGAGAGTGAGGTTCGGGGCGAGTTGCTTGCTAACTTTCAGCTCTTTGTCGCGGTGCTCGTGGTCCTCNTCGGAACTGTGGCATCCTATTGCTTTGCAGCTTCAAGATATGGGAATTCTGAGGTTCATAACTTGCACACAATTCAGGATGGATTAGATCAAGACTGAAATAGGGTATGCTATTTTGGTTTTCTCTTTTTTGCACCTAGTTTCTTATAGAACACGTCTGTATATTGAAGTGAAAAGGTCCTCGTGTATGATCACTGAAAATTAAAAAGTAACCCCCCCCCCCCAAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00280	33307	37207	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000280s00015685.1	PF04819.7	DUF716	120	254	2.00E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.320
SRR1783600	control	7.415
SRR1783602	moderate drought stress	7.637
SRR1811619	moderate drought stress	7.827

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.726
DRR006520	Root Summer glycyrrhizin high producing strain	14.860
DRR006521	Root Winter glycyrrhizin high producing strain	25.972
DRR006522	Root Winter glycyrrhizin high producing strain	25.408
DRR006523	Root Summer glycyrrhizin low producing strain	55.485
DRR006524	Root Summer glycyrrhizin low producing strain	56.045
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.402
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.542

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.572
SRR2868004	Drought Stress (root)	38.391
SRR2967015	Control (root)	28.889

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.556
SRR9715740	Leaf	17.754
SRR9715741	Leaf	50.238
SRR9715739	Root	26.080
SRR9715742	Root	63.375
SRR9715743	Root	55.185

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	74.859
SRR8749028	MeJA induced 9h	112.774
SRR8749029	MeJA induced 9h	156.590
SRR8749030	Uninduced	307.473
SRR8749031	Uninduced	261.616
SRR8749032	Uninduced	195.963

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.410
SRR8400027	Control - Root	24.710