Gene detail

Gene detail information of Glyur000280s00015681

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48790.1	1.00E-91	Domain of unknown function (DUF1995)
NR	AES95595.2	4.05E-164	plant/K24G6-12 protein [Medicago truncatula]
trEMBL	tr\|G7K855\|G7K855_MEDTR	2.00E-164	Plant/K24G6-12 protein {ECO:0000313\|EMBL:AES95595.2}

Sequence

Transcript Sequence

>Glyur000280s00015681.1
TTCAGTTTGAGGGTATTAATTAAACNTGTTTGGCACTTACTTCTTGCTGCATGCGAGGTGCACCTTCAAAATGGTTTTATCCACTACTATGATTCTCTCTATTTCTCCAATTCCAACCGCTTCTCTACCAACTTCAACGGTTGTCAAGTTGGAAACTTTTTCNCTGAAAAATGGTGGGGTTATCAGAATCAAAGGGATTACTGCTCCTTCAATGGCACCCAGAAATCGAAAATTAGCAACTTGTTCTGTTTCGGCTTCTGGTGACGCCAATGCCTCTGTGGAGACTGATGTGTCTTTCCCCACTGATTATTTCGAGCTTCTGGAACAAGCTAGAGTTGCAGTTGAATTGGCCATGAAGGATAACAAACAGCTAATGGAGATTGAGTTTCCAACAGCTGGACTCACGTCCGTACCAGGTGATGGTGAAGGTGGAATAGAGATGACTGGGAGCATGCAATTGATTCGTGAATTCTGTGATAGCCTCATTACTTCAGAGAAAGCCACACGAACAAGAATATTTTTTCCAGAAGCTAGTGAAGTTGACTTTGCCAGACAATCAGCCTTTAGTGGAGCTTCTTTTAAGTTGGACTATCTGACAAAGCCTTCATTTTTTGAAGATTTTGGCTTTGTTAAGAAAGTGAAAATGTCAGAGAGAGTGAAGGCAGGAGATGAACTTTTCCTGGTGGCCTACCCATATTTTAATGTCAATGAAATGCTTGTTGTGGAAGAACTTTACCAAGAGGCGGTCTTGAACACTGAACGGAAACTGATCATTTTCAATGGAGAACTCGATCGTATTAGATCTGGGTGCTATCCAGGACCCTGGAAGGTCCTCAGAAGAATGGGGAGTAGTAGTAAATATGTTTGTCTACATCAGCAGGATACTATGCCATCCCTTAAGGAAGTGGCCCTTGATNTTCTTCCAACAACTTGATGTTTCAGTAATAATAATGGTAAGCAATTATAGTTTCCTTCTTGCCCTTACTTGGTGAATCCACTAGTACTATATCTTTTACACTTTTCAGAGCGAACAACATTGGCATTAACTTAACATGTCTATGAAAAAGATTAACTCACCCTACTTGTTTCTGTGGGAAGAAGACTAATGAAAAGGAAATTTTTGAAATTTTATGTACTGATGAGCAACAGGGTTGGTCTTCAGCTTCTTCTGCGGAGATTTAGAAAGAAGTCTACAGTTGGCATTTGATTAACGAAGAATTGAAGTTGTGGCCCAAAGAAGTGGAGTTATCTAGCACAAAATTGGCGTTAATAGCTAGCAAGTTGCTGCTCGTACAGCTTAGAAATTCATCTGAGCAATGCTTGTTTTCTGTCTTTATGGGTGTGTATTGTACAGAACTATATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00280	10944	14270	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000280s00015681.1	PF09353.5	DUF1995	76	244	2.80E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.001
SRR1783600	control	2.063
SRR1783602	moderate drought stress	2.530
SRR1811619	moderate drought stress	2.632

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.873
DRR006520	Root Summer glycyrrhizin high producing strain	6.186
DRR006521	Root Winter glycyrrhizin high producing strain	1.958
DRR006522	Root Winter glycyrrhizin high producing strain	1.921
DRR006523	Root Summer glycyrrhizin low producing strain	5.630
DRR006524	Root Summer glycyrrhizin low producing strain	5.574
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.259
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.943

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.539
SRR2868004	Drought Stress (root)	2.943
SRR2967015	Control (root)	3.016

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.373
SRR9715740	Leaf	32.715
SRR9715741	Leaf	22.777
SRR9715739	Root	1.324
SRR9715742	Root	2.471
SRR9715743	Root	1.495

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.700
SRR8749028	MeJA induced 9h	0.598
SRR8749029	MeJA induced 9h	0.329
SRR8749030	Uninduced	0.327
SRR8749031	Uninduced	0.202
SRR8749032	Uninduced	0.053

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.697
SRR8400027	Control - Root	9.899