Gene detail information of Glyur000280s00015680 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G32100.1 | 1.00E-121 | pinoresinol reductase 1 |
| NR | XP_003612639.1 | 0 | Isoflavone reductase-like protein [Medicago truncatula] |
| COG | YP_001655687.1 | 2.00E-07 | chaperon-like protein for quinone binding in photosystem II [Microcystis aeruginosa NIES-843] |
| Swissprot | tr|P52581|IFRH_LUPAL | 0 | Isoflavone reductase homolog |
| trEMBL | tr|B7FJQ2|B7FJQ2_MEDTR | 0 | Pinoresinol-lariciresinol reductase-like protein {ECO:0000313|EMBL:AES95597.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00280 | 4351 | 10162 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000280s00015680.1 | PF05368.8 | NmrA | 6 | 225 | 4.60E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.929 |
| SRR1783600 | control | 32.724 |
| SRR1783602 | moderate drought stress | 25.876 |
| SRR1811619 | moderate drought stress | 25.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.718 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.513 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.410 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.417 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.753 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.924 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.205 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 144.700 |
| SRR2868004 | Drought Stress (root) | 91.888 |
| SRR2967015 | Control (root) | 97.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.416 |
| SRR9715740 | Leaf | 1.386 |
| SRR9715741 | Leaf | 3.887 |
| SRR9715739 | Root | 12.560 |
| SRR9715742 | Root | 25.511 |
| SRR9715743 | Root | 23.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.407 |
| SRR8749028 | MeJA induced 9h | 8.542 |
| SRR8749029 | MeJA induced 9h | 1.768 |
| SRR8749030 | Uninduced | 28.676 |
| SRR8749031 | Uninduced | 13.176 |
| SRR8749032 | Uninduced | 8.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 131.906 |
| SRR8400027 | Control - Root | 94.575 |