Gene detail information of Glyur000280s00015679 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45580.1 | 4.00E-18 | Homeodomain-like superfamily protein |
| NR | AES95614.2 | 3.78E-77 | myb-like transcription factor family protein [Medicago truncatula] |
| Swissprot | tr|Q9SAK5|APL_ARATH | 5.00E-12 | Myb family transcription factor APL |
| trEMBL | tr|G7K874|G7K874_MEDTR | 1.00E-77 | Myb-like transcription factor family protein {ECO:0000313|EMBL:AES95614.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00280 | 404 | 1686 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000280s00015679.1 | PF14379.1 | Myb_CC_LHEQLE | 21 | 66 | 1.90E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.139 |
| SRR1783600 | control | 2.059 |
| SRR1783602 | moderate drought stress | 1.162 |
| SRR1811619 | moderate drought stress | 1.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.509 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.086 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.609 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.264 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.227 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.997 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.786 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.352 |
| SRR2868004 | Drought Stress (root) | 3.402 |
| SRR2967015 | Control (root) | 2.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.434 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.684 |
| SRR9715742 | Root | 1.732 |
| SRR9715743 | Root | 1.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.480 |
| SRR8749028 | MeJA induced 9h | 5.646 |
| SRR8749029 | MeJA induced 9h | 9.765 |
| SRR8749030 | Uninduced | 1.889 |
| SRR8749031 | Uninduced | 1.110 |
| SRR8749032 | Uninduced | 1.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.059 |
| SRR8400027 | Control - Root | 15.766 |