Gene detail

Gene detail information of Glyur000279s00013266.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22400.1	3.00E-123	PLAT/LH2 domain-containing lipoxygenase family protein
NR	XP_003626860.1	0	Lipoxygenase [Medicago truncatula]
Swissprot	tr\|Q9LUW0\|LOX5_ARATH	7.00E-143	Linoleate 9S-lipoxygenase 5, chloroplastic
trEMBL	tr\|G7LEB2\|G7LEB2_MEDTR	0	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur000279s00013266.1
ATGAATGGAATTGAACACCCAAAAAGGCCTTCTAGTATTATGTCCAAGTGGCACTGCTCTTCAGTCAAAAGCAAAATTGCCAACAACTTAAATCCTGTATGCAAAGCTGGCCAACAATTAACTCTCAAGGCGAAGTTTGTGATCACCCTCAATCAAAAGAAACCAATACCTGGAAAATTGATTTCTGTTCAGATTTATAGTGGCACAGAAGTGGATCCTAATACTGGTAAAGGGAGGTTGAGTGAGAAATCATATTTGAAGGAGGGTGGGAGTGAGAAACATCACCATGATGCACAAACCATGAGTAGTGTGACATATAAAGTTAAACTACATGTTGACTCACATTTTGGAACTCCAAGAGCTTTTGTGATTCAAAACAATTACAAGAAGAGATTCTTTCTTCAGTCTGCATCTATTGATCAGAGTTTTACCGATCGCATCATTCACTTCGATTGCAATTCTTGGATTTATCCAATCAAGAAGACCAAATCCGATCGACTCTTCTTCTCAAATAGATGCTATCTTCCAAGTCAGACACCTAGAGCATTAGTAGAACTAAGGAAGGAGGAGCTTGATAGATTGAGGGGTAATGGAATGGGAGAAAGAAAGGAATGGGATAGAATCTATGACTATGACTACTATAATGACCTTGGTGACCCTGACAAAGGGTGGCTCAAGTTTAAGGTAGCAATCTCAATTGGCATGAATCATTGGAATGAAGGTCCATCAACTGAGAGCAGGCCACAAGCAACAAAATTCAACGTATACGTTCCTTCAGATGAGAGATTTAGCCCCAGCAAATTGAAGGAGCTCAAATCAAATTCTATCCATGCCATGGTACATTTTCTATCAATTAAGGTAGAATCATTACCTCAACGAAGTTCTAGAAGCTTTCAGTCATTTGAAGAGATACTTGACATGCTCTCTAGCAATAAAAGCCAAACAATAGAAGGATGGATCAGAGACAACTTAAAGAAACTGGTACCAGTTGAATACTTAAAGGAAGTAACTCAAGCAATCAAGGAAAACCATCAGCAATTTCCTGTTCCTCAAATAATATCTGAAAATGAATGGCCTTGGAAGGATGACATGGAGTTCGGACGACAAATGCTTGCCGGAACACACCCAGTCAGAATCCAGTGCTTGATGTCATTCCCACCTCAAAACAAATTTGGAGTACAGAGTTCAATGAAACGATCAATCATTGAACAGAAGCTTGAAGGATGGACACTTCCTCAGGCAATGGAACAGGGAAGAATATTCATGCTGGACCACCATGACTATCTCATGCCATATTTGAACCGAATAAACGCAAATGGGGTATGTGCTTATGCATCCAGGACACTTCTATTCTTAAGGAGTGATGGCATGCTTAAGCCACTGACAATAGAACTTAGCTTGCCAGGCTCATCTCTGGATCGCGAAATCCAAAGAATTTTTCTTCCAGCCAAGCAGGGAACACAAGCAGCACTTTGGCAGCTCGCTAAGGCTCATGTTTTAGCTAATGATGCTATTTACCATCAACTAATTAGCCATTGGTTATACAGCCATGCAGTTGTTGAACCGTTTATCCTTGCTACCAAAAGAAGGCTAAGTGTAATGCATCCAATCCATCGGATATTGAGTCCTCATTTCAAAGACACCATGCACATAAATGCCTTGGCACGACTCATCCTCATTAACTCAGGAGGGATTCTGGAGAGAACATTATTTCCTGGTGAAATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00279	214348	218111	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00454	LOX2S	EC:1.13.11.12	Linoleic acid metabolism	map00591
			alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000279s00013266.1	PF01477.18	PLAT	62	169	5.40E-11
Glyur000279s00013266.1	PF00305.14	Lipoxygenase	181	574	7.10E-118

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.142
SRR1783600	control	0.134
SRR1783602	moderate drought stress	0.152
SRR1811619	moderate drought stress	0.150

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.183
DRR006520	Root Summer glycyrrhizin high producing strain	0.173
DRR006521	Root Winter glycyrrhizin high producing strain	0.064
DRR006522	Root Winter glycyrrhizin high producing strain	0.021
DRR006523	Root Summer glycyrrhizin low producing strain	0.074
DRR006524	Root Summer glycyrrhizin low producing strain	0.186
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.076
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.250
SRR2868004	Drought Stress (root)	0.181
SRR2967015	Control (root)	0.233

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.290
SRR9715740	Leaf	0.037
SRR9715741	Leaf	0.109
SRR9715739	Root	0.000
SRR9715742	Root	0.036
SRR9715743	Root	0.202

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.002
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.007

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.351
SRR8400027	Control - Root	0.365