Gene detail

Gene detail information of Glyur000279s00013263

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21630.1	0	Sec23/Sec24 protein transport family protein
NR	XP_004510207.1	0	PREDICTED: protein transport protein SEC23-like [Cicer arietinum]
Swissprot	tr\|Q9SFU0\|SC24A_ARATH	8.00E-09	Protein transport protein Sec24-like At3g07100
trEMBL	tr\|G7LEA6\|G7LEA6_MEDTR	0	Protein transporter Sec23-like protein {ECO:0000313\|EMBL:AET01330.1}

Sequence

Transcript Sequence

>Glyur000279s00013263.1
AAAAAAGAAAAATTAATAAAGTATGGTACTCTAGAGTGTATACTACTCACTAGCCATCAAACAGGCGAAGAAGAACTGAACCATTTTCAGTGCGCATATAATAATAATAAAAATAACAGAACCATTCTCCGTCTTAAAAATCATCGAAACAAACCCAGATTCACACCACTCCCGTGCCCGTNCCCCCACAATGGCGGAATTCGTGGATCTAGAATCCCAAGACGGCGTGCGCATGCCGTGGAACGTGATCCCTGGCACGAAGCAGGAGGCNATAAACGCCGTCGTTCCNGTGGCCGCAATCTACACTCCCATAAGGCACTTCCCTTCCATGCCCGTTCTCCCTTACTCCCCGCTCCGTTGCCGCACGTGCCGTTCCGTTCTCAACCCCTTCTGCATCGTGGACTTCGCCGCTAAGATCTGGATCTGCCCCTTCTGCTTCCAGCGCAACCACTTCCCCCCTCACTATGCTTCCATCTCCGACGANAACCTCCCCGCCGAGCTCTTCCCTCAGTACACCACCGTCGAGTACGACTCTCCCTCCGACCCCTCCCCGCACGTGCCACCAGTNTTCCTCTTCGTCGTCGACACGTGCGTCCTNGAGGAGGAGATCGGGTTCCTCCGATCCGCGATCGCTCAGGCCGTTGAGCTTCTTCCGGAGAATTCCCTCGTTGGCCTCGTCACGTTTGGAACCTTCGTTCAAGTTCACGAGCTCGGGTTCGGTGCTGTGCCCAAGACCTATGTCTTCAAGGGCTCTAAGGATGTCTCCAAGGACCAGCTCCTCGAGCAGATGAGCTTCTTCGCAAAGAAGCCGAAGCCCGCGGTCGGTGTTGTTGCCGGCGCAAGGGATGGGCTTTCGTTGGAGAGCATTTCACGGTTTTTGCTCCCGGCGTCGGAGTGTGAGTTCGCGCTCAATTCGGTTTTGGATGAGCTGCAGAGGGATCCCTGGCCGGTGCCCGGTGATCAGCGGGCGACTAGGTGCACCAGTACCGCGCTGAGTATTGCGGCGAGTTTGTTGGGGGCTTGTGTTCCTGGTTCTGCAGCCAGAATAATGGCCTTTATTGGTGGACCTGCAACCGAAGGACCTGCTCCTATTGTATCCAAACAACTTTCTGAACCAATTCGCTCCCACAAGGACCTGGATAAAGATTCTGTGTCACATTACCACAAGTGTGTGAAATTCTATGATGGACTTTCAAAGCANCTTGTACATCAAGGTCATGTACTAGATCTCTTTGCTTGTGCTCTTGATCAGGTTGGCATTGCTGAACTTAAAACTGCTGTTGAAAGGACTGGGGGCCTTGTTGTACTTGCTGAAAGTTTTGGCCATCCAGTGTTCAAGGATTCACTTAAGCGTGTTTTCCAATCGGGTGATTATGACCTGGGCTTATCATCAAATGGAATATTTGAGATAAACTGCTCTAAGGACATTAAAGTTCAAGGTATTGTTGGCCCTTGTGCTTCCCTTGAAAAGAAAGGCCCATTATGCGCAGATGCTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAGATGTGTGGCCTTGACAAATCGACATCATTGTGTCTGTTTTTTGACATTGTGAGGAAGGAAAGTCCTGATGCTGCAGTGCAGTCCACAAGCAATCAATTTTACTTCCAATTCTTGACTTATTATCAGAATAATAGTGGACAAATGAGATTTCGGGTTACAACCCTTTCACGTAGATGGGTTGCTGGACCAGGAAGCATACAGGATTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGCCAAGTGTCTTTCAAAATGGAAACAGAGGCTGAATTTGATCCTATCAGATGGTTGGATAAGGCATTGATAAATCTGTGTTCCCGATTTGGAGAGTTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCACAATTTATGTTTCATTTACGACGTTCTCAGTTTGTTCAGGTCTTCAACAACAGCCCAGATGAGACTGCTTATTTTAGAATGATTCTGAACCGAGAAAATGTTGCTAATTCCGTTGTCATGGTCCAGCCTTCGTTGATTTCTTATTCGTTCCATTCTGGTCCTGAACCTGCTCTTCTTGATGTCGCAGCCATTGCTGCTGACAGGATCCTGCTTTTGGATGCTTTTTTCACTGCTGCATTTGCTCAGTTGCTACGAGCTCCTCACGATGATGCAGATTCAATAATGAAAGAGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCCCAGGCTCGATTTCTACTAGCGAAGTTAAATCCTTCTGCAACATATAACACCGAAGCTTCACTTCCTGGAGGGGATATTATCTTCACGGATGATGTTAGCTTTGAGGTCTTCCTGGATCATTTACAGAGATTAGGAAGGGGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00279	194774	203815	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006888 ER to Golgi vesicle-mediated transport

cellular_component
GO:0030127 COPII vesicle coat

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000279s00013263.1	PF04810.10	zf-Sec23_Sec24	54	92	1.10E-17
Glyur000279s00013263.1	PF04811.10	Sec23_trunk	123	390	2.40E-65
Glyur000279s00013263.1	PF08033.7	Sec23_BS	402	506	5.40E-28
Glyur000279s00013263.1	PF04815.10	Sec23_helical	521	621	5.80E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.158
SRR1783600	control	31.544
SRR1783602	moderate drought stress	30.269
SRR1811619	moderate drought stress	29.806

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.676
DRR006520	Root Summer glycyrrhizin high producing strain	26.299
DRR006521	Root Winter glycyrrhizin high producing strain	12.853
DRR006522	Root Winter glycyrrhizin high producing strain	12.111
DRR006523	Root Summer glycyrrhizin low producing strain	22.306
DRR006524	Root Summer glycyrrhizin low producing strain	22.596
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.201
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.820

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.958
SRR2868004	Drought Stress (root)	35.761
SRR2967015	Control (root)	33.975

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.684
SRR9715740	Leaf	12.279
SRR9715741	Leaf	13.839
SRR9715739	Root	21.498
SRR9715742	Root	27.680
SRR9715743	Root	24.371

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.870
SRR8749028	MeJA induced 9h	23.480
SRR8749029	MeJA induced 9h	13.080
SRR8749030	Uninduced	5.001
SRR8749031	Uninduced	2.239
SRR8749032	Uninduced	3.069

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.162
SRR8400027	Control - Root	45.759