Gene detail

Gene detail information of Glyur000279s00013259

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31530.1	7.00E-113	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004510204.1	0	PREDICTED: uncharacterized protein At2g37660, chloroplastic-like [Cicer arietinum]
COG	YP_724032.1	5.00E-84	Male sterility-like protein [Trichodesmium erythraeum IMS101]
Swissprot	tr\|O80934\|Y2766_ARATH	8.00E-27	Uncharacterized protein At2g37660, chloroplastic (Precursor)
trEMBL	tr\|K7MFW6\|K7MFW6_SOYBN	5.00E-168	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G09170.2}

Sequence

Transcript Sequence

>Glyur000279s00013259.1
AGTTTGTGAGGTCACCATTTGTTAATGAACAAAAAATAAAAATAAAAGAAAACTGGTGGTGACTAATTGCAGTGTGGTTACTGTGGTGACTGGTGACTGGTGACTGGTGCAGCAGAGTAGAGTTTTCATGGCTTGTGGTGCTGCTGCTACGCTCCCTTTACCTTTCTTCGCCCAACCTCACCACCGTCTTTCTCTTTCTCGGCGCCGTCAATTTTTCTTCGCCAACAGTCTCCCTAACCGAATCCCCGTTTCGAGACGAAGTTCCAATTATCATAAGCGCGTTCANGCAAAAGCTGTTTCTACCGACCCCCAAAACGCTCTCAGCGTCAGCGATGACGATACACAACAAAACACCCCCTCCTCATCCTCGTCCTCCAAACTGGTCCTTGTTGTTGGTGCCTCTGGTGGTGTTGGGCAGCTGATTGTGGCATCACTACTTCAGCGGAATGTTAAGTCACGCTTGATAGTTAGGGATCCTGAGAAAGCCACAAAACTGTTTGGTAAACAAGATGAAGAGAAACTGGAGGTATTGAAAGGGGACACAAGGAATCAGGATGACTTGTATCCATCCATGTTTGAGGGAGTCACACATGTGATTTGCTGCACAGGAACAACAGCTTTTCCCTCAAAGCGGTGGGATGATGACAATTCACCAGAAAGAGTTGATTGGGTGGGAGTGAAGAATCTAGTATCTGCATTGCCTTCCTCAGTGAAGAGAGTTGTTCTTGTGTCATCAATAGGNGTGACCAAGTATAATGAATTGCCATGGAGCATAATGAACCTATTTGGGGTCTTGAAGTATAAGAAGATGGGGGAGGATTTTCTTCGGAGTTCTGGCCTTCCATTTACCATAATCAGGCCTGGAAGGTTGACAGATGGACCATACACATCTTATGATCTCAATACTTTACTCAAAGCAACAGCTGGGCAACGAAGAGCAGTCCTTATAGGTCAAGGAGATAAACTAGTGGGAGAGGCCAGCAGAATTNTTGTTGCAGAAGCTTGCATACAGGCACTAGATCTAGAAGTCACTGAAAACCAAATTTATGAAGTTAACTCTGTTGAGGGGGAAGGTCCTGGAAATGAAGCTCAGAAGTGGCAAGAACTATTCAAGGCCGCACACACTTCTTAACTGGACTTCCGATCAACGCTTTTATAGCATTTGGAGGCAATGTGTACGCATCATAATTTGGGACTTCAGCTCTACAATTATTGTATATATATTTTTTTTCCCTTCATCATTGAAAGGTGAGTAAAATGTGAATTCAAAATGCAAAAACGCAGACACACACCCACACACACGCAATCTAGGTACCCACGTAGACAAAAGTAAAATAAACATGAGCTACCCTAAATACCCTAAATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00279	174486	178356	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000279s00013259.1	PF13460.1	NAD_binding_10	86	298	2.60E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.885
SRR1783600	control	5.905
SRR1783602	moderate drought stress	6.060
SRR1811619	moderate drought stress	5.934

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.150
DRR006520	Root Summer glycyrrhizin high producing strain	5.868
DRR006521	Root Winter glycyrrhizin high producing strain	4.247
DRR006522	Root Winter glycyrrhizin high producing strain	4.053
DRR006523	Root Summer glycyrrhizin low producing strain	8.287
DRR006524	Root Summer glycyrrhizin low producing strain	8.262
DRR006525	Leaf Summer glycyrrhizin high producing strain	140.524
DRR006526	Leaf Summer glycyrrhizin high producing strain	139.594

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.906
SRR2868004	Drought Stress (root)	12.521
SRR2967015	Control (root)	6.152

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	138.616
SRR9715740	Leaf	180.490
SRR9715741	Leaf	147.641
SRR9715739	Root	3.179
SRR9715742	Root	6.124
SRR9715743	Root	4.582

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.467
SRR8749028	MeJA induced 9h	8.061
SRR8749029	MeJA induced 9h	7.998
SRR8749030	Uninduced	2.964
SRR8749031	Uninduced	1.080
SRR8749032	Uninduced	1.882

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.752
SRR8400027	Control - Root	13.884