Gene detail information of Glyur000279s00013256 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27740.1 | 1.00E-28 | Yippee family putative zinc-binding protein |
| NR | KHM99998.1 | 2.73E-50 | Protein yippee-like [Glycine soja] |
| Swissprot | tr|Q2V3E2|YIPL5_ARATH | 3.00E-36 | Protein yippee-like At4g27740 |
| trEMBL | tr|I1MM37|I1MM37_SOYBN | 1.00E-50 | Protein yippee-like {ECO:0000256|RuleBase:RU110713} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00279 | 159173 | 159583 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000279s00013256.1 | PF03226.9 | Yippee-Mis18 | 2 | 91 | 9.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.411 |
| SRR1783600 | control | 4.870 |
| SRR1783602 | moderate drought stress | 3.057 |
| SRR1811619 | moderate drought stress | 3.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.197 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.551 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.332 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.496 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.407 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.068 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.153 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.051 |
| SRR2868004 | Drought Stress (root) | 0.310 |
| SRR2967015 | Control (root) | 0.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 68.757 |
| SRR9715740 | Leaf | 58.866 |
| SRR9715741 | Leaf | 117.827 |
| SRR9715739 | Root | 8.090 |
| SRR9715742 | Root | 20.184 |
| SRR9715743 | Root | 19.535 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.005 |
| SRR8749028 | MeJA induced 9h | 1.859 |
| SRR8749029 | MeJA induced 9h | 3.070 |
| SRR8749030 | Uninduced | 1.777 |
| SRR8749031 | Uninduced | 0.272 |
| SRR8749032 | Uninduced | 0.507 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.003 |
| SRR8400027 | Control - Root | 35.807 |