Gene detail information of Glyur000279s00013245 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | KEH18052.1 | 5.75E-37 | Defensin-like protein [Medicago truncatula] |
| Swissprot | tr|P93331|NOD1_MEDTR | 2.00E-20 | Nodulin-1 (Precursor) |
| trEMBL | tr|A0A072TKU6|A0A072TKU6_MEDTR | 2.00E-37 | Defensin-like protein {ECO:0000313|EMBL:KEH18052.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00279 | 85975 | 87114 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000279s00013245.1 | PF00304.15 | Gamma-thionin | 29 | 72 | 9.70E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.299 |
| SRR1783600 | control | 2.185 |
| SRR1783602 | moderate drought stress | 1.470 |
| SRR1811619 | moderate drought stress | 1.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.980 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.207 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1289.788 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1248.543 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.558 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.750 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 88.859 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 89.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.168 |
| SRR2967015 | Control (root) | 0.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 940.614 |
| SRR9715740 | Leaf | 598.870 |
| SRR9715741 | Leaf | 1414.281 |
| SRR9715739 | Root | 100.390 |
| SRR9715742 | Root | 162.891 |
| SRR9715743 | Root | 138.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.108 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 53.454 |
| SRR8400027 | Control - Root | 147.692 |