Gene detail

Gene detail information of Glyur000279s00013241

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13610.1	3.00E-139	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	AFK37640.1	0	unknown [Lotus japonicus]
COG	YP_004572412.1	1.00E-29	oxidoreductase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q9LHN8\|F6H1_ARATH	0	Feruloyl CoA ortho-hydroxylase 1
trEMBL	tr\|I3SBJ8\|I3SBJ8_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK37640.1}

Sequence

Transcript Sequence

>Glyur000279s00013241.1
ATAAATAGTTGTACACATGGGTTTTCCAAGCACACCAAATTAAGTTAAGAAGGTCTCAATCAGCAAAATAAAAAACTCATGAGCTATTCACTTACGATAGCCAATACCCCAATGTCCATCCCCTCAGATATCAATGAATTTGTGATGCTGAAAGGGAATGGAGTAAAGGGTTTCTCTGAAATGGGCATAGAGACTCTCCCCAAGCAATACATCCAACCTTTGGAAGAGAGAACGAGCATGATCAAAGTTATCTCTGACCAGTCCATTCCCATCATTGACNTGTCCAGTTGGGATGACCCAAAAGTGGAAGATGCAATTTGTGATGCAGCTGAGAAGTGGGGATTCTTCCAAATCATCAACCATGGGGTTCCCCTTCAAGTGCTGGATAACGTCAAGGATGCAACTCACAGGTTCTATGACCTGCCAGCTGAGGAGAAAGTTAAGTACACAAAAGAGAATTCTCCCTCCAAACATGTGAGGTATGGATCTAGTTTTAGCCCNGAAGCAGAAAAGGCCCTAGAGTGGAAAGATTATCTCAGCCTCTTCTATGTTTCCGATGCTGAGGCTGTAGCAACATGGCCCCTTGCTTGCAGGGATGAAGCACTAGAATACATGAAGAGATCCGAAACGGTAATCAGACGGCTTATAAATGTGTTGATGAAGAGACTAAATGTGAAGGAAATTGACGAGACAAANGAATCATTGTTTATGGGTTCAAGGAGAATCAACCTCAACTACTATCCCATTTGCCCTAACCAAGACCTGACCGTAGGAGTAGGGCGCCATTCAGATGTGTCAACCCTAACTGTTCTCTTCCAAGACCAAATCGGTGGCCTCTATGTACGGGTTCCTGACCGCGACGATTGGATCCACATACCACCAATATCTGGTGCCCTAGTGATCAACATAGGTGATGCATTACAAATAATGAGCAATGGGAGGTACAAGAGCATTGAGCATAGAGTGGCAGCCAACGGGAGCGAGACTAGGGTTTCAGTGCCTNTTTTTGTGAACCCTAGACCCTCAGATGTCATTGGACCTTTGCCTCAAGTACTTGCTAGTGGGGAGAAGGCAGTGTATAAAAACGTGCTATATTCGGATTATGTGAAGCATTTCTACAGGAAAGCTCATGATGGGAAGACGACTCTTGAATATGCCAAGATATGAAGACTTTAATTATTATGTAGTACCNTTAGCTTTACGTTTAATACAATTTAGATATATATGTGTGTTGAGAATAAAGAAGCTTTGTGGGTTAGTTTCATATTGGGGTACTGCATGTGGTGAAAGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00279	54468	55881	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000279s00013241.1	PF14226.1	DIOX_N	63	158	1.80E-24
Glyur000279s00013241.1	PF03171.15	2OG-FeII_Oxy	216	313	2.90E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.241
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.292

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.002

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.480
SRR9715740	Leaf	3.114
SRR9715741	Leaf	4.072
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.013
SRR8400027	Control - Root	0.093