Gene detail

Gene detail information of Glyur000279s00013236.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27530.1	4.00E-83	Pectin lyase-like superfamily protein
NR	XP_006465488.1	0	PREDICTED: uncharacterized protein LOC102623476 [Citrus sinensis]
COG	YP_003391696.1	9.00E-30	glycoside hydrolase family 28 [Spirosoma linguale DSM 74]
Swissprot	tr\|Q9LW07\|PGLR3_ARATH	6.00E-94	Probable polygalacturonase At3g15720 (Precursor)
trEMBL	tr\|M0SLK4\|M0SLK4_MUSAM	2.00E-161	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P06370_001}

Sequence

Transcript Sequence

>Glyur000279s00013236.1
GTGGATTAATGTTGGAACCACAAACACTATAAATAATGTAATGGACTATGGTGCTTGTGGCGATGGCAAATGTGATGATTCACAGGCATTTTTAAGGGCATGGAATAGTACATGTGGAGCAGAAGGAACAACAAGTCTTGTTATCCCACAAGCAAAATCATTCTTGGTGACGAGCCTAACATTAAGCGGTCCTTGCACGGCCACAAGTGTTCACATTCAGCTTCAAGGGAATATAGTTGCACCTTCTAAGGATGCATGGGGGGATGATAAGTCAAATTGGATTGTGATCTCAAATGTCAATGGACTCACGTTGATGGCGAGGACTAATCGATGGCGATGGAGCTACTTGGCCTTGCGCTTCCATGNTTGTAATGGTCTTACTGTTAGTAACCTAAGCATCACCAATACCCCAGAAGCTCACATAGCCATAAATGGTTGCGATGGTGCCACATTCTCTAATATGAATATTACTGCTCCTTCTGACAGCCCCAACACTGATGGATTTGACATTTCTGCTTCCAATAATATCTTGATAGAAGATTCCACCATAGCAACTGGGGATGATTGTATTGCCATCAATGGTGGCTCCTCTTACATCAATGCTACTCGTGTTGCTTGTGGACCAGGACATGGAATAAGCATTGGCAGCCTTGGTAAAAATGGAGCTTATGAGACAGTTGAAGAGGTTCATGTACAGAATTGCACCTTCGTAGGGTCTTCAAATGGAGCAAGAATCAAGACATGGCCGGGTGGGTCAGGTTATGCAAGGAAGATTACTTTTGAGCAAATCAACCTTATAGATGTGAGAAACCCAATAATTATAGACCAGAACTACGGTATTAAAGATGCAACGGAGTCAGCAGTGCAAGTGAGTGAGGTGACATATCGTGGGTTCAATGGAACTTCTGTTAGTGAAGAAGCAATTAACTTAGACTGCAGCTCGTTGGGTTGTTTCAACCTTGCATTTGATCAAGTTAACATTGTCTCTTCTCAACCAGGAAAGGAGACTCACGCTTCTTGCACAAATGCACATGGAACAGTTGAGTCCAATGTTGTTCCAAGACTAATCACTTGTGTTTTGATTCTTGGTTTTGTTTCACCTTGTCTATGTCTGGGGTGGAATGTTGGAACCAAAAATATTATCCATAATGTGCTGGAATTTGGTGCTCGTGGTGATGGCAGATTCGATGATTCACAAGCATTTTTAAGAGCATGGAGTAGTACGTGTGGAGCAGAAGGCACAGCGACTCTAGTTATACCACCAGGAAGATCATTCTTGCTTCAAGGGAAAATAGTTGCACCTTCTATGGTAGCATGGAGAGATAAGTCATATTGGATTAGGATCATGAATGTAAACAGACTCTCGATTTATGGCGGAGGAATAATCGACGGCTATGGTTCTACTTGGTGGCAATGCAGATGTCCTCGACCTATAGCCTTGTTTTTCCATGGCTGTAATGGTCTTACTGTTAGTCACCTAAGCATCATTAATAGCCCAGGAGCTCACATAGGCATAAATGGTTGTTTCGGTGCCACATTCTCTTTTATGAATATTCTTNCGCCTCGTCAAAGCCCCAACACTGATGGATTTGACATTTCTGCTTCCAAGAATATCTTGATAGAAGATTCCACCATAGCAACCGGGGATGATTGTATTGCCATCAATGGTGGAAGCTCTTTCATCAATGCTACTCGGGTTACTTGTGGACCAGGCCACGGGATAAGCGTTGGCAGCCTTGGTAGAGATGGAGCTCATGAGATAGTTGAAGAGGTTTATGTACAACATTGCACCTTCAAGTGGACTGAAAATGGAGCAAGAATTAAGACATGGCCGGGTGGGTCAGGTTATGCAAGGAAGATTACTTTTGACCAAATTTTTCTTATAGATGTCAGCAACCCAATAATTATAGACCAGAAATACAATCTTATAAATACAACGTCAGCGGTGCAAGTGAGTGACGTGACATACCGTGGGTTTAATGGAACTTCTGTTAGTGATGAAGCAATTGACTTAGACTGCAGCTCATTGGGTTGTTTCAACATTGTATTGGATCAAATTCACATTGTCTCTGCTCAACCAGGAAGGAGGACTTACGCTTCTTGCAGGAATGCACATGGAATAGTTGGATCCAATGTTGTTCCAACTGTCTCTTGCATGTCCAGATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00279	32905	42032	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000279s00013236.1	PF00295.12	Glyco_hydro_28	25	331	1.00E-75
Glyur000279s00013236.1	PF00295.12	Glyco_hydro_28	412	692	1.00E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.014
SRR1811619	moderate drought stress	0.053

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.103
DRR006522	Root Winter glycyrrhizin high producing strain	0.099
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.316
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.600

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.016
SRR2868004	Drought Stress (root)	0.008
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.127
SRR9715741	Leaf	0.279
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.001

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.039
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.017
SRR8749032	Uninduced	0.028

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.027
SRR8400027	Control - Root	0.000