Gene detail

Gene detail information of Glyur000278s00017297

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30220.1	0	inositol transporter 2
NR	XP_003524151.1	0	PREDICTED: probable inositol transporter 2 [Glycine max]
COG	YP_004290515.1	4.00E-78	sugar transporter [Methanobacterium sp. AL-21]
Swissprot	tr\|Q9C757\|INT2_ARATH	0	Probable inositol transporter 2
trEMBL	tr\|K7LCL7\|K7LCL7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G11111.1}

Sequence

Transcript Sequence

>Glyur000278s00017297.1
ATGGAAGGAGGAGTAATAGAAGCGGACGTGTCTGCTTTCAGAGAATGTTTGTCTCTGTCATGGAAAAATCCTTATGTTCTTCGCCTTGCTTTCTCTGCTGGAATTGGCGGTCTTCTCTTTGGTTATGACACTGGAGTGATATCTGGGGCCCTTTTATACATCAGAGATGATTTCAAAGATGTGGATAGAAAGATTTGGCTGCAGGAAGCCATAGTGAGTATGGCCCTTGCTGGAGCAATCATAGGTGCTTCAGTTGGTGGATGGATTAACGATCGATTTGGAAGGAAAAAAGCAATCCTATTTGCAGATACACTCTTCTTTATTGGGGCTGTTGTAATGGCTGCCGCTACCAATCCATCTATTCTCATTGTTGGCCGAGTTTTTGTTGGCCTTGGTGTTGGAATGGCTTCAATGGCATCCCCATTATACATCTCAGAAGCTTCTCCAACCAGAGTTAGAGGTGCCTTAGTTAGTCTCAATGGATTTCTCATTACTGGAGGACAATTCCTCTCCTACCTCATCAACTTGGCCTTCACAAAAGCACCAGGAACATGGAGATGGATGTTAGGAGTAGCAGCAGTACCAGCTCTGTTACAAATCATTCTGATGATTATGCTGCCAGAATCACCTCGTTGGTTGTTTCGAAAGGGAAAAGAAGAAGAAGGTGAAGCAATTCTAAGGAGGATTTACCCACCCNAGGAAGCTGAAGTTGAAATCAATGCTTTGAGGGAATCAGTTGAACTAGAAATCAAGGAAGCAGAAACTTCTGATAAGGTCAGCATAATCAAGATGCTGAAAACTAAAACTGTGAGGAGAGGTTTATATGCAGGAATGGGCCTTCAAATCTTCCAGCAGTTTGTGGGGATCAATACTGTGATGTACTACAGCCCCACCATTGTTCAGTTAGCTGGTTTTGCATCAAACCAAACTGCACTTCTCCTGTCACTCGTCACCGCTGGGCTGAATGCATTTGGCTCTATTGTGAGCATATACTTCATAGATAAGACAGGAAGGAAAAAACTTCTGTTGTTCAGTTTGTTTGGTGTTGTTGGCTCCCTTGTTGTTTTGACTGTTGTGTTCCATCAGAGTACAACTCACTCGCCAATGGTCAGTGCAATTGAAACCTCTCACTTCAATAATACTTGCCCTGATTACCGTACAGCTGTGAACCATGGTGAGTGGGATTGCATGAAGTGCCTAAAGGCTTCTCCAGAATGTGGCTTTTGTGCTTCTGGAGCTAATAAGCTTCTCCCTGGGGCATGTTTGATCTCCAATGACACCNCAAAGGGTCAATGCCAAAAAGAGCACAGACTATGGTACACCAGGGGGTGTCCTAGTAAATTTGGATGGCTTGCAATAATAGGCCTTGCACTCTACATCTTATTCTTCTCCCCTGGGATGGGAACCGTGCCATGGGTTGTCAACTCTGAGATTTACCCTTTAAGATATAGAGGAATCTGTGGAGGAATGGCATCTACAGCCAATTGGGTCTCAAATCTTATTGTTGCTCAGTCCTTTCTATCCCTGACACAAGCTATTGGAACCTCGTGGACATTCATGATATTTATATTCATCACTGTTGCGGCCATTGTCTTTGTTATTATTTTTGTACCAGAAACCAAAGGGCTCCCAATGGAAGAGGTGGAGAAGATGCTGGAAAGAAGATCTCTCAACTTCAAGTTTTGGCAGAGAAGTTCCGACTCTGGAGAAGTGCTACCACAGAAGACTCAATCAACTTAAGGTTAATTGTGTTGTGTNGTTGGTTCAGACAAAGGTAATATAATAACAAAGTGTGGCTGTTGGATTAGCAGAGTAGATTTATTAAATACTTCATCTTCTGTCAGTAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00278	195504	199632	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000278s00017297.1	PF00083.19	Sugar_tr	30	366	3.00E-92
Glyur000278s00017297.1	PF00083.19	Sugar_tr	444	551	1.40E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.123
SRR1783600	control	1.049
SRR1783602	moderate drought stress	1.616
SRR1811619	moderate drought stress	1.409

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.166
DRR006520	Root Summer glycyrrhizin high producing strain	1.159
DRR006521	Root Winter glycyrrhizin high producing strain	0.482
DRR006522	Root Winter glycyrrhizin high producing strain	0.471
DRR006523	Root Summer glycyrrhizin low producing strain	0.418
DRR006524	Root Summer glycyrrhizin low producing strain	0.478
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.894
SRR2868004	Drought Stress (root)	8.644
SRR2967015	Control (root)	13.704

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.170
SRR9715740	Leaf	0.034
SRR9715741	Leaf	0.127
SRR9715739	Root	0.745
SRR9715742	Root	1.856
SRR9715743	Root	1.901

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.286
SRR8749028	MeJA induced 9h	0.503
SRR8749029	MeJA induced 9h	0.289
SRR8749030	Uninduced	1.936
SRR8749031	Uninduced	1.847
SRR8749032	Uninduced	0.985

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.598
SRR8400027	Control - Root	1.939