Gene detail

Gene detail information of Glyur000278s00017294

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30220.1	0	inositol transporter 2
NR	XP_007138519.1	0	hypothetical protein PHAVU_009G216100g [Phaseolus vulgaris]
COG	YP_003405196.1	1.00E-78	sugar transporter [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|Q9C757\|INT2_ARATH	0	Probable inositol transporter 2
trEMBL	tr\|V7B0U8\|V7B0U8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW10513.1}

Sequence

Transcript Sequence

>Glyur000278s00017294.1
ATGGCAAAGAATCAGTGCCTGAAAGATCACAGGGAATGGTACACCAGGGGATGTCCTAGCAGATGGGGTTGGCTTGCACTGGTTGGCATGGCACTATATATCATATCCTTCTCACCAGGAATGGGAACTGTTCCATGGGTCGTCAACTCTGAGATTTATCCCTTGAGGTACCGTGGAGTTTGTGGAGGGATTGCTTCTACAACTGTTTGGGTCTCCAATCTCATTGTTTCCCAGTCCTTTTTGTCCCTGACACAAGCTATTGGGACTTCATGGACATTCATGCTGTTTGGAATTGTTGCTCTCATTGGAATTTTCTTTGTCATCATTTTCGTACCAGAAACCAAGGGAGTTCCAATTGAGGAAGTTGAGAAGATGCTGGAACAAAGGACCGTGCAGTTTAAAGAGTGTTTGGCTCTTTCAAAGACCAATCCATATATTCTCCACCTTGCATTCTCTGCTGGAATTGGTGGTCTTCTTTTTGGCTATGACACTGGTGTGATATCTGGTGCTCTTTTGTATATTAGAGATGACTTCAAAGAAGTTGACAGAAAAACTTGGTTGCAGGAAGCCATAGTAAGTATGGCACTTGCCGGTGCTATTATAGGAGCAGCGGTTGGTGGATGGATGAATGACCGTTTTGGAAGAAAAATTGCTATCCTTTATGCAGATGCACTCTTCTTTGCTGGGTCAGTTGTCATGGCCGCTGCTCCTAACCCAACCATTCTGGTTATTGGTCGATTTTTTGTTGGCCTTGGTGTTGGAATGGCATCAATGGCATCCCCACTTTACATCTCAGAGGCATCTCCAACCAGAGTTCGAGGAGCCCTTGTAAGTCTCAATAGTTTTCTCATCACTGGGGGACAATTCCTTTCCTACCTCATCAACTTGGGATTAGCCAGGTTAAAGGGAACATGGAGGTGGATGTTAGGAATAGCGGCAGTACCTGCTGCTGTACAAATTGCACTTATGATTACACTCCCAGAATCACCCCGTTGGCTATTCAGAAAGGGAAGGCAAGAGGAAGGTAAAGAAATTTTGAGGAAGATTTACCCGCCTGAGGAAGTTGAAGCCGAGATCCAAGTTTTGAAGGACTCAACTGAATTGGAAATCAAGGAAGCAGAAACCATAGGTAAGGTTGGCATGGGACAAATGCTGAAAACAAAAGCTGTGAGGAGAGGTTTATATGCAGGGATGGGCCTTCAAATTTTCCAGCAGTTTGTGGGCATCAACACAGTCATGTACTACAGCCCCACCATTGTTCAGTTGGCTGGTTTTGCATCCAATGAGACAGCACTTCTTTTGTCACTCATCACAGCTGGGCTAAATGCATTTGGATCCATTCTGAGCATGTACCTGATTGACAAGGCTGGGAGAAGGAAGCTTGCTCTNGGCAGTTTGGTTGGAGTTACAGTGTCCCTTGCTCTTCTCACTGCCATTTTCCGCCAGACTGAGACTAACTCCCCACCGATTAGTCCAATTGAAACATCTCGCTTTAATGCCACCTGCCCTAGTTACACTTCTGCTACCAACCCTGCTCAATGGGATTGCATGACTTGCCTTAAAGCCACTCCAGAATGTGGCTTCTGTGCTTCCACAGATAGGCTAAAACCCGGGGCATGTTGGATCCACGATGACCCCGCCAAGGATCATTGCGGTTCACAACACAGGGATTGGTACACAAAGGGATGTCCTAGCAAAACTGGATTTGTTGCAATAATAGGCTTGGGACTGTATATTATATTCTTTTCACCTGGAATGGGAACTGTTCCATGGGTTATCAACTCTGAGATATACCCTTTGAGATACAGAGGGGTTTGCGGAGGAATGGCATCCACAGCAGTGTGGGTTTCTAACCTCATTGTCTCCCAATCCTTCTTGTCCGTGACAGAGGCCATTGGGACTGCATGGACATTCATGGCTTTTGGAATAATTAGTTGTTTGGCCATTGTCTTTGTCATCATTTTCGTACCAGAAACCAAGGGAGTTCCAATTGAGGAGATAGAGAGGATGCTGGATGAAAGAACTCTCAACTTCAAATTTATAGAGTTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00278	170901	181848	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000278s00017294.1	PF00083.19	Sugar_tr	21	125	2.00E-25
Glyur000278s00017294.1	PF00083.19	Sugar_tr	150	483	9.50E-89
Glyur000278s00017294.1	PF00083.19	Sugar_tr	564	670	3.30E-26
Glyur000278s00017294.2	PF00083.19	Sugar_tr	30	359	2.60E-90

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.326
SRR1783600	control	0.328
SRR1783602	moderate drought stress	0.619
SRR1811619	moderate drought stress	0.594

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.205
DRR006520	Root Summer glycyrrhizin high producing strain	2.131
DRR006521	Root Winter glycyrrhizin high producing strain	0.183
DRR006522	Root Winter glycyrrhizin high producing strain	0.202
DRR006523	Root Summer glycyrrhizin low producing strain	0.318
DRR006524	Root Summer glycyrrhizin low producing strain	0.279
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.617
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.606

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.761
SRR2868004	Drought Stress (root)	1.504
SRR2967015	Control (root)	1.454

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.024
SRR9715740	Leaf	1.007
SRR9715741	Leaf	1.216
SRR9715739	Root	1.015
SRR9715742	Root	1.206
SRR9715743	Root	1.054

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.271
SRR8749028	MeJA induced 9h	8.653
SRR8749029	MeJA induced 9h	4.972
SRR8749030	Uninduced	5.095
SRR8749031	Uninduced	1.112
SRR8749032	Uninduced	1.271

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.823
SRR8400027	Control - Root	1.797