Gene detail

Gene detail information of Glyur000278s00017293.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18390.2	7.00E-30	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
NR	XP_007025032.1	1.13E-123	Teosinte branched 1, putative isoform 4, partial [Theobroma cacao]
Swissprot	tr\|Q93V43\|TCP2_ARATH	4.00E-63	Transcription factor TCP2
trEMBL	tr\|A0A061GKS6\|A0A061GKS6_THECC	4.00E-124	Teosinte branched 1, putative isoform 4 {ECO:0000313\|EMBL:EOY27654.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000278s00017293.1
ATGGAGGAGGATGAGATTCAAGCACAAGTGTGTAAGTTCCCAAGAGTTGGTAATGGTAGTAGAAATGAGGAAGAGGATGGAGAGGTCNGTCTCAGAAGATCAAGAGGTGGAGGAGGAAGTGATAACAACAACAATGGGAGCACAAACAGGTTCCATAGTAGTTGGCATCACTCTTCTAGAATCATAAGGGTGTCTCGAGCATCTGGTGGGAAAGACAGGCACAGCAAGGTCATGACTTCAAAGGGTTTAAGAGACAGAAGGGTTAGGCTATCTGTGACCACAGCCATTCAATTCTATGATCTTCAAGACAGGTTGGGTTATGACCAACCAAGTAAAGCAGTGGAGTGGCTAATCAAATCAGCTTCAGATGCAATTGCAGAGTTACCTTCTCTTAACAACACATTCCCTGATACCCCAAAACAACCAAGCGATGAGAAGAGAGCAAGTGTGGGAACCACCACAAACGAACAAGGCTTTGACTCAGCTGATGCAGAAATGGATGGTGGTGAGAACAACAACTACCATCATCAACAGCAGAACCTTTCTTTGTCCAAATCTGCTTGCAGCAGCACTTCAGAGACAAGCAAAGGTTCTGGCTTGTCACTCTCAAGGTCTGACATTCGTGCGAACCGTTTCAAGGCCAGAGAGAGAGCAAGGGAATTAAGAGCAGCCAAGGAGAAGGAAAAGGAGAAGGAGAATAATGAGTCTCACAACAACATTGCTCATCACAACCACCATCACAACAATGTGAACTCCATTTCTCAAACAGCTTCTTTCACTGAGCTACTCACAGGTGGAATAAACGGTAGTGCANTTCACCCCACAAGCAGTCCAAGAGGAGGGTCAGTTCAAGAAACAGCAAGACAGCAATGGAGTTCAGCACCAATGGACTACTTCAGTTCAGGGCTTTTGGGGCCTTCTTCCTCAAGAAATCACCAATCTTCTTCTTCTGGGGGGTTCTCATCAGTGTCACAAATGATCCAATTGGGACATTCACATAATTCCCTTGCTGATCATCACCACCAGGCAATAATGTCAATGTCTTCAGTTTCACCATTCAGCTGCAACACTGGTGAAAACCAATCTTGTTCAGATCAGATGCAGCAGCATTTCTCCTTCATCCCTGATCACCTCATGCCAGCACCTGTGGTTACTTCTTCTTCTCATCAGCAGCCAAGTGGGAACGATTACAATCTGATCAACTTCACAATCTCTTCTACTTCGGGCCTTGCTGCTGGTTATAACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTCTTTTGCCTCATTTGCAGAGTTTTCATCTGTCTTTGATGGCAGCCGCTTGCACCTCTGCTATGGCAATGCTTGCCGGCATTCAGATCACAAGGGGAAAGCCAAAAACTGAGTTCAAAGTTCCAACCTTTTCACTTTTGGTCCATTTTCTTCCTGATGAACGTACCATCTCCCTGAAATGGAAAGAACTCCTTGATTTAGACCACATGGACTTAAAAGATAGAGTACTAGCAGCAAGCTGTGTCCCAAAGCTTGCCTTCGCCAAAACAGATGATATTGCTGTGAATTTTCAAAGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00278	146043	155604	-

Gene family

Gene family	subfamily
Transcription Factors Family	TCP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000278s00017293.1	PF03634.8	TCP	68	233	1.70E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.289
SRR1783600	control	10.380
SRR1783602	moderate drought stress	6.594
SRR1811619	moderate drought stress	6.573

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.274
DRR006520	Root Summer glycyrrhizin high producing strain	3.153
DRR006521	Root Winter glycyrrhizin high producing strain	1.021
DRR006522	Root Winter glycyrrhizin high producing strain	0.903
DRR006523	Root Summer glycyrrhizin low producing strain	5.668
DRR006524	Root Summer glycyrrhizin low producing strain	5.336
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.123
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.641

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.590
SRR2868004	Drought Stress (root)	15.393
SRR2967015	Control (root)	15.132

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.956
SRR9715740	Leaf	33.374
SRR9715741	Leaf	34.315
SRR9715739	Root	1.283
SRR9715742	Root	6.550
SRR9715743	Root	5.035

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.001
SRR8749029	MeJA induced 9h	0.005
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.034
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.122
SRR8400027	Control - Root	2.708