Gene detail

Gene detail information of Glyur000278s00017292.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46180.1	2.00E-152	ornithine-delta-aminotransferase
NR	XP_004504557.1	0	PREDICTED: ornithine aminotransferase, mitochondrial-like [Cicer arietinum]
COG	YP_001741215.1	4.00E-116	putative ornithine/acetylornithine/succinyldiaminopimelate aminotransferase (ornithine/acetylornithine/succinyldiaminopimelate transaminase) (dapC-like) [Candidatus Cloacimonas acidaminovorans str. Evry]
Swissprot	tr\|Q9FNK4\|OAT_ARATH	0	Ornithine aminotransferase, mitochondrial (Precursor)
trEMBL	tr\|B1A0U3\|B1A0U3_PEA	0	Ornithine aminotransferase {ECO:0000313\|EMBL:ABZ10818.1}

Sequence

Transcript Sequence

>Glyur000278s00017292.1
CAGTGCTTTTTTATTTTACACTTTTCATTTGTATATATTGTTATTGAGTTAAATTAATTGTTTAAGGTCATATATTGAAATGATCTTTCCTGTTTCAAATGCAGTTACCATCCAATTCCCATTGTATTTTCTCAAGCAAAGGGAGCGNCTGTATGGGATCCAGAGGGAAACAAATATATTGATTTTCTATCTGGTTACTCTGCTGTTAATCAGGGACATTGCCATCCTAAAATTCTGAAAGCATTACAAGAACAGGCAGAAAGGCTGACCGTGAGCTCTCGAGCCTTCTACAATGATCGCTTTCCAGTCTTTGCTGAGTATGTGACAGCCATGTTTGGGTATGATATGGTACTTCCTATGAATACTGGTGCTGAAGGTGTGGAAACAGCTATGAAATTGGCAAGAAAGTGGGGTTATGAAAAGAAAAAGATCCCCAACAATGAGGCTCTTATTGTCTCATGCTGTGGCTGCTTCAATGGTCGTACACTGGGTGTCATATCTATGAGCTGTGACAATGAAGCTACCCGCGGTTTTGGTCCTTTAATGCCAGGCCTTCTTAAAGTTGATTTTGGTGATGCAGAAGCCCTTGAAAGAATTTTTAAAGAAAATGGAGACCGCATAGCTGGATTTATTTTAGAACCTATCCAAGGTGAAGCTGGGGTAAAAATTCCTCCAGAGGGCTATTTGAAAGCTGTTAGAGATCTTTGCACCAAATATAATGTGCTGATGATTGCTGATGAAATACAAACTGGATTAGCAAGAACAGGGAAAATGCTGGCTTGTGACTGGGAAGAAGTTCGCCCAGATGTAGTGATACTAGGGAAAGCATTGGGTGGAGGAATTATACCAGTTAGTGCAGTTCTTGCAGACAAAGATGTGATGCTTTGTATAAAACCTGGACAGCATGGAAGTACCTTTGGGGGAAATCCATTGGCCAGTGCAGTTGCTATTGCTTCACTAGATGTGATCAAAGAGGAGAAACTTGCTGAGAGATCTGCAAAAATGGGAGAGGAGCTCATTCGTCAGCTGCATGAGATTCAGAAGCAGCACCCAAACCACGTGAAGCAGGTACGGGGAAAAGGATTATTCATCGGAGTGGAGCTTAACAGCGAAAGTTTGTCCCCTGTATCAGGTTTTGAGTTAAGCGAAAAACTGAAGGATAGAGGAGTACTTGCCAAGTCAACACATGATACGATCATTCGCTTCACTCCCCCACTTTGCATAAGTGGGGATGAGATTCAAGAAGGTTCCAAGGCCCTGGCTAATGTGCTGGAAATTGATCTACCAAAGTTGCAGAAGCTGAAGCCAAAAGATGCTTCTCCTCCAGCTGCCCCTAGTGCATGTGATCGTTGTGGTCGAGTCTTGTATGGTTAACCATATAATGATCTTTGAACTGGATGATCCTTTAGTTATTTCTTATTTTTGTCTGGAAAAGGATGTGAATAATGGCATTTCTTATACATGAACTGTTAGAAACTATTTGTGCGTTCGATGCATACACTGAATTATAAAATTTACTGCAACATCCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00278	139418	143697	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00819	rocD, OAT	EC:2.6.1.13	Arginine and proline metabolism	map00330

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0008483 transaminase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000278s00017292.1	PF00202.16	Aminotran_3	3	259	5.20E-88

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	102.499
SRR1783600	control	103.064
SRR1783602	moderate drought stress	101.425
SRR1811619	moderate drought stress	100.236

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	178.569
DRR006520	Root Summer glycyrrhizin high producing strain	176.639
DRR006521	Root Winter glycyrrhizin high producing strain	142.851
DRR006522	Root Winter glycyrrhizin high producing strain	137.804
DRR006523	Root Summer glycyrrhizin low producing strain	256.878
DRR006524	Root Summer glycyrrhizin low producing strain	259.923
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.210
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.639

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	84.044
SRR2868004	Drought Stress (root)	108.231
SRR2967015	Control (root)	126.149

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.697
SRR9715740	Leaf	29.072
SRR9715741	Leaf	34.375
SRR9715739	Root	52.674
SRR9715742	Root	68.782
SRR9715743	Root	62.833

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	91.484
SRR8749028	MeJA induced 9h	111.400
SRR8749029	MeJA induced 9h	89.734
SRR8749030	Uninduced	78.944
SRR8749031	Uninduced	69.156
SRR8749032	Uninduced	87.697

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	110.946
SRR8400027	Control - Root	120.792