Gene detail

Gene detail information of Glyur000278s00017278.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G46210.1	cullin4
NR	KHN47328.1	Cullin-4 [Glycine soja]
Swissprot	tr\|Q8LGH4\|CUL4_ARATH	Cullin-4
trEMBL	tr\|I1K3E9\|I1K3E9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G27240.1}

Sequence

Transcript Sequence

>Glyur000278s00017278.1
AAAAAATATTAAAAAAAGAGAGTTGTGTCTGATTTTGTATTCCCTCTCATCATCCACCTGTCTCAATCCGAATTCCGAAGCGGATCTATTGTCTATGTGTTTAGGTTCACTCCCAATCACAATGCTGTGTTGATCAGCTTCATGTCGAAACGCTCCGCCACCGCCGATGAAGAAGGCGAAGTCACAGGCCGTCGCGTGCTCCCTCGACGACCCCAATGCGCGTGGCCTCATGGCCGCCAATTTGTCCCGCAAAAAAGCCACCCCTCCTCAGCTCCCCAAGAAGCTCCTCATCAAGCTCCACAAAGCTATTTGTGCTATATTTTTGAAGCAACCTGATTCTTGTGACTTGGAGAAGCTGTATCAGGAGTGTGAAGCACACATATCTGCAGCACTGCAGTCTTTAGTTGGCCAAAGCCCAGATTTGATTGTTTTTCTATCCCTTGTTGAGAGATGTTGGCAGGATTTTTGTGACCAATTGTTGATGATTCGTAGTATAGCATTGTATCTGGANAGGACGTATGTGAAGCAAACAACAAATGTACGGTCATTATGGGACATGGGCTTGCAACGCTTCTGCAAACATCTTTCACTATCTCNAGGAGTCGAACACAAAACTGTTACTGGTCTTCTACGTATGATTCAAACTGAAAGATCAGGTGAAGCAGTGGATAGAACACTTCTAAACCATCTTTTGAAAATGTTTATTGCTCTGGGAATTTNTGCAGAAAGCTTTGAGAAGCCATTCCTTGAATGCACATCTGGATTTTATGCTGCTGAAGGTATGGAATACATGCAGCAATCAGATGCTCCAGATTATTTGAAGCATGTGGAGGAAACCATTGATAGCGAGTTAGCGACTGCAGAAAAGCAACTTCTTGAACGTCATATACCTTCCATTCTTGATAAGGGTTTTACTATGCTTATGGATGGGAATCGTATTGAAGACCTTCAGAGAATGTACTCACTCTTTTCAAGGGTCAATNCCCTTGAGTCACTGAGGCAGGCCCTTAGTTCATACATCAGGAGAACTGGGCAGGGTATTGTTATGGATGAGGAGAAAGATAAAGATATGGTTGCATCCCTTCTGGAATTCAAGGCTTCTCTCGACACAATATGGGAAGAAAGCTTCTTCAAGAATGAAGCTTTCAGTAACACAATTAAAGATGCATTTGAACATCTTATCAATCTTCGCCAGAACCGACCTGCTGAGTTGATTGCCAAGTTTTTGGATGAGAAGCTTCGTGCAGGTAATAAGGGGACTTCTGAGGAGGAACTAGAGGGTACACTTGATAAAATCCTGGTGTTATTCAGGTTCATTCAGGGAAAGGACGTGTTTGAAGCGTTCTATAAGAAAGATCTTGCTAAAAGACTTCTTTTAGGAAAGAGTGCTTCAATTGATGCGGAGAAATCTATGATCTCAAAGTTGAAGACTGAGTGTGGCAGCCAGTTCACTAACAAACTGGAGGGAATGTTTAAGGACATCGAATTATCAAAAGAAATAAATGAGTCCTTCAAACAATCAGCCCAGGCCAGGTCCAAACTCCCGTCAGGGATTGAAATTAGTGTCCATGTCTTAACAACAGGTGGAAGACGTCTGATGTGGCAAAATTCATTAGGTCACTGTGTCTTAAAAGCAGAGTTTCCTAAAGGAAAAAAGGAGTTGGCCGTGTCCTTATTTCAGACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAATTAAGTTTTCAAGATATCAAAGATGCAACTAGTATTGAGGACAAGGAACTGAGAAGGACTCTGCAATCACTTGCTTGTGGAAAAGTTCGTGTCCTACAAAAGATGCCCAAGGGAAGAAATGTGGAGGAAGATGACTCATTTGTTTTCAATGATGGGTTTACAGCTCCTCTACCGTATAAAGTGCAGGTGAATGCAATTCAGTTGAAGGAGACAGTCGAGGAAAACACAAGCACCACTGAAAGAGTTTTCCAGGACCGTCAGTATCAGGTTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGCTGAAATTCCCAATAAAACCGGCTGATTTGAAGAAGAGGATTGAAAGCCTCATTGACAGGGAGTATCTAGAAAGGGACAAGAATAACCCTCAAATATACAATTACCTCGCGTAGTATATTTTGCTTTACATCACATTTTAATTTTCTTTTGTAAATGACATGGGAGAGGTTTGATGTTTAATCCCTTGTCACGTGTACAGTCTGTAACTATACAGGTTTTTTTCCCACCTTCCACCCCCCTCTTCCTCTCTTTCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00278	31378	41443	+

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex

molecular_function
GO:0031625 ubiquitin protein ligase binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000278s00017278.1	PF00888.17	Cullin	56	473	6.60E-118
Glyur000278s00017278.1	PF00888.17	Cullin	474	571	3.00E-27
Glyur000278s00017278.1	PF10557.4	Cullin_Nedd8	600	663	4.50E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.872
SRR1783600	control	3.817
SRR1783602	moderate drought stress	6.574
SRR1811619	moderate drought stress	6.427

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.085
DRR006520	Root Summer glycyrrhizin high producing strain	3.938
DRR006521	Root Winter glycyrrhizin high producing strain	5.821
DRR006522	Root Winter glycyrrhizin high producing strain	5.814
DRR006523	Root Summer glycyrrhizin low producing strain	3.514
DRR006524	Root Summer glycyrrhizin low producing strain	3.292
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.531
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.803

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.687
SRR2868004	Drought Stress (root)	5.854
SRR2967015	Control (root)	5.511

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.765
SRR9715740	Leaf	1.612
SRR9715741	Leaf	2.007
SRR9715739	Root	0.304
SRR9715742	Root	1.392
SRR9715743	Root	1.392

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.253
SRR8749028	MeJA induced 9h	6.144
SRR8749029	MeJA induced 9h	12.452
SRR8749030	Uninduced	18.566
SRR8749031	Uninduced	10.179
SRR8749032	Uninduced	9.490

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.643
SRR8400027	Control - Root	4.811