Gene detail

Gene detail information of Glyur000278s00017271

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G14920.1	GRAS family transcription factor family protein
NR	ABI34432.1	CRY [Pisum sativum]
Swissprot	tr\|Q8S4W7\|GAI1_VITVI	DELLA protein GAI1
trEMBL	tr\|B2BA71\|B2BA71_PEA	CRY {ECO:0000313\|EMBL:ABI34432.1}

Sequence

Transcript Sequence

>Glyur000278s00017271.1
ATGAAGAGGGAGAATGAGCAGGAGCACGTGAGTAGTGGGAGTGGGAATAATAGTGGTTGGATGGGAGGAGGGAAATCAGGGGTTTGGGGAGAAGGGGAAGAAGGGGGTATGGATGAGCTGTTGGCGGTGGTGGGTTACAAGGTGAGGTCATCAGACATGGCGGAAGTGGCACAGAAGCTGGAACAACTCGAAGAAGCCATGGGAACNGACCAAGACGGCATCACCCACCACCTCTCCTCTGACACCGTTCACTACAACCCCGCCGACATCTCCAACTGGCTCCAAACCATGCTCTCCAATTTCGACCCCCCACCTCCCAACAACAACCACCTCCCCTCTTCCTCCTCCGACGACCTCAAAGCCATCCCCGGCAACGCTATCTACGCCGCCGACACTGCCACCGAGCCTCCCCCCTCCAAACGCACCAAACGGACAACATCAACAACAACCGCCGAGTCAACTCGGTCAGTTGTCGTGGTGGACTCGCAGGACAACGGGATCCGCCTCGTTCACACCCTCATGGCCTGCGCGGAGGCCGTGGAGCAGAACAATCTGGCCGTTGCGGAGGCCCTTGTGAAGCAGATCGGGTACCTGGCGGTGTCTCAGGAAGGAGCCATGAGGAAGGTTGCGACCTATTTCGCGGAGGGTCTCGCGCGTCGAATCTACGGCCTTTACCCGCCGCAGCCGCAGCACTCGGTGGTTTCTGATTCGCTCCAGATCCACTTCTACGAGACTTGCCCTTACCTCAAGTTCGCTCACTTCACCGCGAATCAGGCGATTCTCGAGGCGTTTCAGGGGAAGACGCGCGTCCACGTCATCGACTTCGCCATCGACCAAGGGATGCAGTGGCCGGCACTCATGCAGGCACTCGCACTCCGTCCCGGCGGTCCTCCCGCCTTCCGCCTCACCGGAATCGGACCTCCNTCCACCGACAACTCCGACCACCTCCAACAGGTTGGCTGGAAACTTGCGCAGTTCGCACAGACGATTCATGTCCAGTTCGAGTACCGCGGCTTCGTCGCCAACAGCCTCGCCGATCTCGACGCCTCGATGCTCGATCTCCGGTCGCCAGAGACAGAGTCCGTTGCCGTCAACTCCGTCTTCGAGCTCCACAGGCTACTCGCGCGCCCCGGCGCGCTCGAGAAGGTTTTCTCCGTTGTTCGCCAGATCCGGCCGGAGATCTTCACCGTCGTGGAGCAGGAGGCCGGACACAACGGCCCCGGCGGGTTCCTCGAACGGTTCACGGAGTCGCTGCACTACTACTCTACGCTGTTTGACTCGCTGGAGGGGTCTTCCGTGGACCCGCAGGACAAGGCCATGTCGGAGGTGTACCTGGGGAAGCAAATCTGCAACGTGGTGGCGTGCGAGGGGGTGGACCGGGTCGAGAGACACGAGACGCTGGGACAGTGGAGGAACCGGTTTGGTTCGGCCGGGTTCGGCCCGGTTCACTTGGGGTCTAACGCGTTCAAGCAGGCGAGTATGCTGCTGGCGCTATTCGCGGGTGGGGATGGGTATAGGGTGGAGGAGAGCGATGGGTGTCTCATGCTGGGTTGGCACACCAGGCCCTTGATTGCCACCTCCGCGTGGCAACTCGCCCCCAAATCGGTTCTTACTCACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00278	6783	8402	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function
GO:0000989 transcription factor activity, transcription factor binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000278s00017271.1	PF12041.3	DELLA	38	108	3.80E-33
Glyur000278s00017271.1	PF03514.9	GRAS	169	530	1.40E-135

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	116.973
SRR1783600	control	118.367
SRR1783602	moderate drought stress	176.620
SRR1811619	moderate drought stress	181.694

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	112.585
DRR006520	Root Summer glycyrrhizin high producing strain	122.623
DRR006521	Root Winter glycyrrhizin high producing strain	82.704
DRR006522	Root Winter glycyrrhizin high producing strain	81.500
DRR006523	Root Summer glycyrrhizin low producing strain	154.715
DRR006524	Root Summer glycyrrhizin low producing strain	155.644
DRR006525	Leaf Summer glycyrrhizin high producing strain	51.592
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.285

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	180.399
SRR2868004	Drought Stress (root)	181.943
SRR2967015	Control (root)	189.793

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.866
SRR9715740	Leaf	53.231
SRR9715741	Leaf	55.866
SRR9715739	Root	153.922
SRR9715742	Root	132.050
SRR9715743	Root	132.714

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	63.552
SRR8749028	MeJA induced 9h	30.173
SRR8749029	MeJA induced 9h	34.372
SRR8749030	Uninduced	10.541
SRR8749031	Uninduced	1.174
SRR8749032	Uninduced	10.455

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	73.784
SRR8400027	Control - Root	75.671