Gene detail

Gene detail information of Glyur000277s00017326

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G03070.1	importin alpha isoform 9
NR	XP_004497474.1	PREDICTED: importin subunit alpha-2-like [Cicer arietinum]
Swissprot	tr\|F4KF65\|IMPA9_ARATH	Importin subunit alpha-9 {ECO:0000305}
trEMBL	tr\|A0A072VKX7\|A0A072VKX7_MEDTR	Importin subunit alpha {ECO:0000256\|PIRNR:PIRNR005673}

Sequence

Transcript Sequence

>Glyur000277s00017326.1
AGGACCACCGGTGGAACTTTTTCGGCGGGTGTCTGTCTCAGCTTCTCTTCCCAGTACGGTTGGTTCTCTTCAATGGCCGATCCTGGCTTCGCTGGTAACAAAAGGGACCCTATTAAGTCATCAGTTGGGAATGCTGCGGCGAGCAGGAGACGACAACATGCAGTCACAGTTAGGAAAGAAAGGAGGGAATCGCTGGTGCGTGCGAAGAGACTTTGTAGGGTGGGAGTTGGTGATGATGGTGAAGTTCCCCTTGACGAGGGTGAGATGATGATTGATGAAGAAGAACAATCCATTTTGGAGTCCCAAACTTCCCTGGCAGTGGAAAATTTGAAATCTGCCCTTGCTTATCAGGGGAAGGGTGCAATGCAGAAAAGAGTGGGTGCCCTTCAAGAATTAAGGCGTTTACTGTCAAGATCTGAATTTCCTCCTGTTGAGTCTGCTCTTAAAGCTGGAGCCATGCCCATACTAGTGCAGTGTCTTTCATTTGGTTCTCCAGATGAACAGTTGCTTGAGGCTGCTTGGTGTCTTACAAATATTGCTGCAGGGAATCCAGAAGAAACAAAGGCCTTGCTGCCTGCATTGCCTTTGCTTATTGCTCACCTTGGGGAAAAGAGCTCCTCACCTGTTGCTGAACAGTGTGCTTGGGCACTAGGAAATGTGGCTGGTGAAGATGAAGAGTTGAGGAATGTTCTGCTAATTCAAGGGGCCTTAATCCCTCTTGCAAGAATGTTGCTACCAAACAGACGTTCAACTGTTAGAACAGCTGCCTGGGCTTTGTCTAACCTAATCAAGGGCCCAAATCCTAAAGCTGCTACAGAACTCATTCGTGTNGATGGAGTATTGGATGCAATCGTTCGACACTTGAAGAAAGCGGATGATGAATTAGCAACTGAAGTAGCATGGGTAGTTGTTTATCTATCGGCACTTTCAAATATAGCTACNAGCATGTTGGTGAAGAGTGACATTCTTCAATTGCTTGTAAATAGATTAGCAACATCGAACAGTTTGCAATTACTGATTCCGGTAANGATCTCCAGAACTTTTGATAATGCCATACAAGGCCTGGTGAAATGTCTGAATAGTGAAAACAGGGTCTTGAAGAAGGAAGCAGCCTGGGTGCTGTCTAATATAGCTGCTGGTTCTGTTGAGCACAAGCAGCTGATATATTCTAGTGAGGCATTGCCTTTGCTATTGCACCTTCTTTCTGCCGCTCCGTTTGATATAAGAAAGGAAGTAGCTTATGTGTTGGGCAACCTTTGTGTTGCCCCAAGTAAAGGTGATGAGAAGCCNAGTCTGATCCAGGAGCACCTGGTTTCACTTGTTGATAAAGGATGCTTGCCAGGTTTTATTGATTTGGTTAGATCTGCTGATATTGAAGCTGCTAGGCTAGGACTTCAGTTCATAGAGCTGGTCCTGAGGGGGATGCCAAATGGAAAGGGCCCAAAGCTTGTAGAACAAGAAGATGGGATTGAAGCCATGGAAAGATTCCAGTTTCACGAAAATGAAGATCTGAGAACTATGGCAAATAGTCTAGTTGACAAGTATTTCGGAGAGGACTATGGGCTCGATGAGTAGTCCGGGTCAGAATAGCGACTTTCACAATCGTTTTTGTCCTTGTAATGCATTGCCTTGCCTCAGCTCCATGTCACAGTGAGCAATTTAGGCAATTAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00277	189340	195516	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006606 protein import into nucleus

cellular_component

GO:0005634 nucleus

GO:0005737 cytoplasm

molecular_function

GO:0005488 binding

GO:0005515 protein binding

GO:0008565 protein transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000277s00017326.1	PF00514.18	Arm	147	181	4.80E-06
Glyur000277s00017326.1	PF00514.18	Arm	350	379	4.00E-06
Glyur000277s00017326.1	PF00514.18	Arm	382	420	6.60E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.989
SRR1783600	control	7.099
SRR1783602	moderate drought stress	8.520
SRR1811619	moderate drought stress	8.375

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.112
DRR006520	Root Summer glycyrrhizin high producing strain	15.011
DRR006521	Root Winter glycyrrhizin high producing strain	21.876
DRR006522	Root Winter glycyrrhizin high producing strain	20.517
DRR006523	Root Summer glycyrrhizin low producing strain	11.130
DRR006524	Root Summer glycyrrhizin low producing strain	11.225
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.026
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.990

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.486
SRR2868004	Drought Stress (root)	27.629
SRR2967015	Control (root)	27.608

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.230
SRR9715740	Leaf	14.443
SRR9715741	Leaf	15.981
SRR9715739	Root	12.999
SRR9715742	Root	19.047
SRR9715743	Root	20.076

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.278
SRR8749028	MeJA induced 9h	13.521
SRR8749029	MeJA induced 9h	7.687
SRR8749030	Uninduced	5.135
SRR8749031	Uninduced	2.744
SRR8749032	Uninduced	4.833

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.615
SRR8400027	Control - Root	23.121